| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
Click here to switch to the map view.
The map label for this gene is typA [H]
Identifier: 226223681
GI number: 226223681
Start: 1090581
End: 1092419
Strand: Direct
Name: typA [H]
Synonym: Lm4b_01083
Alternate gene names: 226223681
Gene position: 1090581-1092419 (Clockwise)
Preceding gene: 226223680
Following gene: 226223682
Centisome position: 37.44
GC content: 39.15
Gene sequence:
>1839_bases TTGAATTTAAGAAATGATATTCGTAATGTAGCAATTATTGCCCACGTTGACCATGGTAAAACAACTCTAGTAGACCAATT ACTACGCCAGTCAGGCACATTCCGCGACAATGAAACAGTTGCAGAACGCGCAATGGACAACAATGATTTAGAAAGAGAAC GCGGTATTACAATTTTAGCGAAAAATACAGCGATTAAGTATGAAGATACACGTGTAAACATCATGGATACACCTGGACAC GCCGATTTCGGTGGAGAAGTAGAACGTATCATGAAAATGGTAGATGGTGTTCTTTTAGTAGTGGACGCGTATGAAGGTAC TATGCCTCAAACACGTTTTGTACTAAAAAAAGCACTAGAACAAAACTTAACACCGATCGTTGTAGTAAACAAAATTGACC GTGATTTTGCTCGCCCAGAAGAAGTTGTTGATGAAGTATTAGAATTATTCATCGAATTAGGTGCGAACGACGATCAATTA GAATTCCCAGTTGTTTATGCTTCTGCAATCAACGGAACTTCAAGCTATGATTCTGATCCAGCAGAACAAAAAGAAACAAT GAAACCACTTTTAGACACAATTATCGAACATATCCCGGCTCCAGTTGATAATAGCGACGAACCATTACAATTCCAAGTAT CATTACTTGATTATAATGACTATGTTGGTCGTATCGGTATTGGCCGCGTATTCCGTGGAACAATGCACGTGGGACAAACA GTTGCTTTAATTAAACTTGATGGCACAGTAAAACAATTCCGTGTAACGAAAATGTTCGGTTTCTTCGGACTAAAACGTGA CGAAATTAAAGAAGCAAAAGCGGGTGACTTAGTAGCACTTGCGGGAATGGAAGACATTTTCGTTGGTGAAACAGTAACAC CTTTCGATCACCAAGAAGCACTTCCACTTTTACGTATTGATGAGCCAACATTGCAAATGACTTTTGTTACAAATAACAGT CCTTTCGCAGGCCGTGAAGGTAAACACGTAACAAGCCGTAAAATTGAAGAACGCTTACTTGCAGAACTTCAAACGGATGT ATCTTTACGCGTTGAACCAACAGCTTCTCCAGACGCTTGGGTAGTTTCTGGTCGTGGTGAGCTTCATTTATCCATTCTGA TCGAAACAATGCGTCGCGAAGGTTATGAATTACAAGTTTCTAAACCAGAAGTAATCATCCGTGAAATTGATGGCGTGAAA TGTGAACCAGTAGAAGATGTTCAAATTGATACTCCAGAAGAATTCATGGGTTCTGTTATTGAATCTATTAGCCAACGTAA AGGCGAAATGAAAAACATGATTAACGACGGTAACGGCCAAGTTCGTTTACAATTCATGGTTCCAGCTCGTGGCTTAATCG GTTATACAACTGATTTCCTTTCAATGACTCGTGGTTATGGTATTATCAACCACACATTCGATAGCTACCAACCAATCCAA AAAGGACGCGTTGGCGGACGTAGTCGTGGTGTTCTTGTATCCATGGAAACAGGTAAATCTACTACTTACGGAACAATGCA AGTAGAAGACCGTGGTACTATTTTTATAGAACCTGGTACGGATATTTACGAAGGTATGATCGTTGGGGAAAACAATCGTG AAGGCGATATCGCTGTAAACATTGTGAAAGCAAAACAAATGACTAACATTCGTTCTGCTAACAAAGACCAAACAAACGTA ATCAAAAAACCTCGTCATTTATCACTAGAAGAATCATTAGAATTCCTAAACGAAGATGAATACTGTGAAGTAACACCAGA ATCCATCCGTTTACGTAAAAAAATCCTAAACAAAAACGAACGTGAAAAAGCAGCAAAACGTTCAAAAACTGCTGAATAA
Upstream 100 bases:
>100_bases ACGAGACGATAGCGACGGAGGAAAATAAATCTATTTTCCTCTTTCTTTTGGCTAATCTTCACGATAAATGTTTGGATTTT TAATTTAGGAGGAAACAAGA
Downstream 100 bases:
>100_bases TATATATTTGAATCGGCCAAATGGTTTTTAAGTGGTAGGAATATCCTTTAAAAACTATTTGGTTTTTTTATGCTTTAATT TGCTGGAAAAGGGAATAAAA
Product: GTP-binding elongation factor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 612; Mature: 612
Protein sequence:
>612_residues MNLRNDIRNVAIIAHVDHGKTTLVDQLLRQSGTFRDNETVAERAMDNNDLERERGITILAKNTAIKYEDTRVNIMDTPGH ADFGGEVERIMKMVDGVLLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDRDFARPEEVVDEVLELFIELGANDDQL EFPVVYASAINGTSSYDSDPAEQKETMKPLLDTIIEHIPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMHVGQT VALIKLDGTVKQFRVTKMFGFFGLKRDEIKEAKAGDLVALAGMEDIFVGETVTPFDHQEALPLLRIDEPTLQMTFVTNNS PFAGREGKHVTSRKIEERLLAELQTDVSLRVEPTASPDAWVVSGRGELHLSILIETMRREGYELQVSKPEVIIREIDGVK CEPVEDVQIDTPEEFMGSVIESISQRKGEMKNMINDGNGQVRLQFMVPARGLIGYTTDFLSMTRGYGIINHTFDSYQPIQ KGRVGGRSRGVLVSMETGKSTTYGTMQVEDRGTIFIEPGTDIYEGMIVGENNREGDIAVNIVKAKQMTNIRSANKDQTNV IKKPRHLSLEESLEFLNEDEYCEVTPESIRLRKKILNKNEREKAAKRSKTAE
Sequences:
>Translated_612_residues MNLRNDIRNVAIIAHVDHGKTTLVDQLLRQSGTFRDNETVAERAMDNNDLERERGITILAKNTAIKYEDTRVNIMDTPGH ADFGGEVERIMKMVDGVLLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDRDFARPEEVVDEVLELFIELGANDDQL EFPVVYASAINGTSSYDSDPAEQKETMKPLLDTIIEHIPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMHVGQT VALIKLDGTVKQFRVTKMFGFFGLKRDEIKEAKAGDLVALAGMEDIFVGETVTPFDHQEALPLLRIDEPTLQMTFVTNNS PFAGREGKHVTSRKIEERLLAELQTDVSLRVEPTASPDAWVVSGRGELHLSILIETMRREGYELQVSKPEVIIREIDGVK CEPVEDVQIDTPEEFMGSVIESISQRKGEMKNMINDGNGQVRLQFMVPARGLIGYTTDFLSMTRGYGIINHTFDSYQPIQ KGRVGGRSRGVLVSMETGKSTTYGTMQVEDRGTIFIEPGTDIYEGMIVGENNREGDIAVNIVKAKQMTNIRSANKDQTNV IKKPRHLSLEESLEFLNEDEYCEVTPESIRLRKKILNKNEREKAAKRSKTAE >Mature_612_residues MNLRNDIRNVAIIAHVDHGKTTLVDQLLRQSGTFRDNETVAERAMDNNDLERERGITILAKNTAIKYEDTRVNIMDTPGH ADFGGEVERIMKMVDGVLLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDRDFARPEEVVDEVLELFIELGANDDQL EFPVVYASAINGTSSYDSDPAEQKETMKPLLDTIIEHIPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMHVGQT VALIKLDGTVKQFRVTKMFGFFGLKRDEIKEAKAGDLVALAGMEDIFVGETVTPFDHQEALPLLRIDEPTLQMTFVTNNS PFAGREGKHVTSRKIEERLLAELQTDVSLRVEPTASPDAWVVSGRGELHLSILIETMRREGYELQVSKPEVIIREIDGVK CEPVEDVQIDTPEEFMGSVIESISQRKGEMKNMINDGNGQVRLQFMVPARGLIGYTTDFLSMTRGYGIINHTFDSYQPIQ KGRVGGRSRGVLVSMETGKSTTYGTMQVEDRGTIFIEPGTDIYEGMIVGENNREGDIAVNIVKAKQMTNIRSANKDQTNV IKKPRHLSLEESLEFLNEDEYCEVTPESIRLRKKILNKNEREKAAKRSKTAE
Specific function: Not known; probably interacts with the ribosomes in a GTP dependent manner [H]
COG id: COG1217
COG function: function code T; Predicted membrane GTPase involved in stress response
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. TypA subfamily [H]
Homologues:
Organism=Homo sapiens, GI157426893, Length=511, Percent_Identity=28.7671232876712, Blast_Score=145, Evalue=1e-34, Organism=Homo sapiens, GI94966754, Length=133, Percent_Identity=42.8571428571429, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI4503483, Length=150, Percent_Identity=35.3333333333333, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI18390331, Length=145, Percent_Identity=37.9310344827586, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI25306283, Length=168, Percent_Identity=36.9047619047619, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI19923640, Length=168, Percent_Identity=36.9047619047619, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI25306287, Length=168, Percent_Identity=36.9047619047619, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI34147630, Length=280, Percent_Identity=32.1428571428571, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI310132016, Length=111, Percent_Identity=39.6396396396396, Blast_Score=93, Evalue=9e-19, Organism=Homo sapiens, GI310110807, Length=111, Percent_Identity=39.6396396396396, Blast_Score=93, Evalue=9e-19, Organism=Homo sapiens, GI310123363, Length=111, Percent_Identity=39.6396396396396, Blast_Score=93, Evalue=9e-19, Organism=Homo sapiens, GI217272894, Length=189, Percent_Identity=32.8042328042328, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI217272892, Length=189, Percent_Identity=32.8042328042328, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI94966752, Length=129, Percent_Identity=31.7829457364341, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI53729339, Length=138, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI53729337, Length=138, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI48994988, Length=603, Percent_Identity=53.2338308457711, Blast_Score=663, Evalue=0.0, Organism=Escherichia coli, GI1788922, Length=519, Percent_Identity=29.8651252408478, Blast_Score=166, Evalue=5e-42, Organism=Escherichia coli, GI1789738, Length=166, Percent_Identity=39.1566265060241, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790835, Length=145, Percent_Identity=34.4827586206897, Blast_Score=93, Evalue=6e-20, Organism=Escherichia coli, GI1790412, Length=276, Percent_Identity=28.6231884057971, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1789737, Length=276, Percent_Identity=28.6231884057971, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1789559, Length=167, Percent_Identity=33.5329341317365, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17557151, Length=524, Percent_Identity=26.1450381679389, Blast_Score=131, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17556745, Length=458, Percent_Identity=25.3275109170306, Blast_Score=115, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17533571, Length=171, Percent_Identity=37.4269005847953, Blast_Score=108, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17506493, Length=180, Percent_Identity=32.7777777777778, Blast_Score=104, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71988811, Length=128, Percent_Identity=37.5, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71988819, Length=128, Percent_Identity=37.5, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17552882, Length=140, Percent_Identity=36.4285714285714, Blast_Score=97, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17556456, Length=306, Percent_Identity=28.4313725490196, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI25141371, Length=274, Percent_Identity=27.3722627737226, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71994658, Length=142, Percent_Identity=36.6197183098592, Blast_Score=67, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323320, Length=521, Percent_Identity=28.5988483685221, Blast_Score=147, Evalue=4e-36, Organism=Saccharomyces cerevisiae, GI6324707, Length=210, Percent_Identity=34.2857142857143, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6320593, Length=210, Percent_Identity=34.2857142857143, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6324761, Length=271, Percent_Identity=31.7343173431734, Blast_Score=101, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6323098, Length=177, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6324166, Length=149, Percent_Identity=38.255033557047, Blast_Score=91, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6322359, Length=149, Percent_Identity=34.8993288590604, Blast_Score=88, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6325337, Length=277, Percent_Identity=27.7978339350181, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6319594, Length=277, Percent_Identity=27.7978339350181, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI78706572, Length=515, Percent_Identity=26.7961165048544, Blast_Score=145, Evalue=8e-35, Organism=Drosophila melanogaster, GI28574573, Length=140, Percent_Identity=40.7142857142857, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI21357743, Length=189, Percent_Identity=37.037037037037, Blast_Score=109, Evalue=6e-24, Organism=Drosophila melanogaster, GI281363316, Length=273, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI17864358, Length=273, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI24582462, Length=171, Percent_Identity=35.672514619883, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI24585711, Length=172, Percent_Identity=34.8837209302326, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24585713, Length=172, Percent_Identity=34.8837209302326, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24585709, Length=172, Percent_Identity=34.8837209302326, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI221458488, Length=162, Percent_Identity=37.6543209876543, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI19921738, Length=232, Percent_Identity=30.6034482758621, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI28572034, Length=166, Percent_Identity=34.3373493975904, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI19922690, Length=289, Percent_Identity=27.681660899654, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - InterPro: IPR006298 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: NA
Molecular weight: Translated: 68729; Mature: 68729
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLRNDIRNVAIIAHVDHGKTTLVDQLLRQSGTFRDNETVAERAMDNNDLERERGITILA CCCHHHHCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHCCEEEEE KNTAIKYEDTRVNIMDTPGHADFGGEVERIMKMVDGVLLVVDAYEGTMPQTRFVLKKALE ECCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHH QNLTPIVVVNKIDRDFARPEEVVDEVLELFIELGANDDQLEFPVVYASAINGTSSYDSDP CCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCC AEQKETMKPLLDTIIEHIPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMHVGQT HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCE VALIKLDGTVKQFRVTKMFGFFGLKRDEIKEAKAGDLVALAGMEDIFVGETVTPFDHQEA EEEEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCHHC LPLLRIDEPTLQMTFVTNNSPFAGREGKHVTSRKIEERLLAELQTDVSLRVEPTASPDAW CCEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCE VVSGRGELHLSILIETMRREGYELQVSKPEVIIREIDGVKCEPVEDVQIDTPEEFMGSVI EEECCCCEEHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH ESISQRKGEMKNMINDGNGQVRLQFMVPARGLIGYTTDFLSMTRGYGIINHTFDSYQPIQ HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCHH KGRVGGRSRGVLVSMETGKSTTYGTMQVEDRGTIFIEPGTDIYEGMIVGENNREGDIAVN HCCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEECCCCCHHCCEEEECCCCCCCEEEE IVKAKQMTNIRSANKDQTNVIKKPRHLSLEESLEFLNEDEYCEVTPESIRLRKKILNKNE EEEHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCH REKAAKRSKTAE HHHHHHHCCCCC >Mature Secondary Structure MNLRNDIRNVAIIAHVDHGKTTLVDQLLRQSGTFRDNETVAERAMDNNDLERERGITILA CCCHHHHCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHCCEEEEE KNTAIKYEDTRVNIMDTPGHADFGGEVERIMKMVDGVLLVVDAYEGTMPQTRFVLKKALE ECCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHH QNLTPIVVVNKIDRDFARPEEVVDEVLELFIELGANDDQLEFPVVYASAINGTSSYDSDP CCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCC AEQKETMKPLLDTIIEHIPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMHVGQT HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCE VALIKLDGTVKQFRVTKMFGFFGLKRDEIKEAKAGDLVALAGMEDIFVGETVTPFDHQEA EEEEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCHHC LPLLRIDEPTLQMTFVTNNSPFAGREGKHVTSRKIEERLLAELQTDVSLRVEPTASPDAW CCEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCE VVSGRGELHLSILIETMRREGYELQVSKPEVIIREIDGVKCEPVEDVQIDTPEEFMGSVI EEECCCCEEHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH ESISQRKGEMKNMINDGNGQVRLQFMVPARGLIGYTTDFLSMTRGYGIINHTFDSYQPIQ HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCHH KGRVGGRSRGVLVSMETGKSTTYGTMQVEDRGTIFIEPGTDIYEGMIVGENNREGDIAVN HCCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEECCCCCHHCCEEEECCCCCCCEEEE IVKAKQMTNIRSANKDQTNVIKKPRHLSLEESLEFLNEDEYCEVTPESIRLRKKILNKNE EEEHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCH REKAAKRSKTAE HHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]