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The map label for this gene is ykrA [H]

Identifier: 226223647

GI number: 226223647

Start: 1058810

End: 1059580

Strand: Direct

Name: ykrA [H]

Synonym: Lm4b_01049

Alternate gene names: 226223647

Gene position: 1058810-1059580 (Clockwise)

Preceding gene: 226223643

Following gene: 226223649

Centisome position: 36.35

GC content: 38.52

Gene sequence:

>771_bases
ATGAGTAAAATTGTATTTTTTGATGTAGATGGGACACTTGTAGGAGAAACGAAAGAAATTCCAGCATCAGCGAAGCAAGC
GATTGCTAAATTGAAAGAAAATGGCGTTTATGTGGCTATTGCAACTGGTCGTGGTCCATTTATGCTTGATGAAATCAGAA
AAGAATTAGATATTAATTCTTATATTTGCTACAACGGTCAATATGTTATTTTTGAAGGAAAAGAAATATACGCTAAACCA
TTACCAACAGAATCTTTAGAACGATTAATCACGGTTGCATCGGAGCATGAGCATCCAATTGTTTTTTCAGGAAAAGATTC
CATGCGCGCGAATTTACCGGATCACGACCGGGTGACAATCGGAATGGATTCTATTAAAAGAGATTATCCTAAAGTGGATG
CTAATTATTATAAAGGTCGTGACATTTATCAGTGTTTACTTTTCTGTGATGAGTCGTATGATGCTTATTACCGAGAAGAA
TTTAAGCAGTATGGTTTCTTGCGCTGGCATGATGTTTCCGTGGATGTTTGTCCAGCTGACGGTTCGAAGGCGGAAGGCAT
TAAACAAATGATCAAAAAACTTGGCTTCTCGATGGAAGATACTTACGCATTTGGCGATGGTTTGAACGATATTGCAATGC
TTCAAGCTGTTGGAACTGGCGTGGCAATGGGCAACGGCCGTGATGAGGTAAAAGCGGTCGCTGACTATGTTACGGATCAT
GTGGATGAAGATGGGGTTTATAAAGCTTTAGAACATTTAAAATTAATTTAA

Upstream 100 bases:

>100_bases
AAGTATAATTAATTTTGTCAACCCTGTTATCAATGAGATTTTCTGCTATAATTTAAACATAATGATTTAAAAATGGATAG
AGGATAGAGGCGTTTAATCA

Downstream 100 bases:

>100_bases
AATATCAAAAAAGCCTGTGCTCAAAAATAGAGCACAGGCTTTTTTGGTTATTTTTTGAACGGAACACAGCTAGTTCTTTC
GATTAAGCTTGTATTCACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINSYICYNGQYVIFEGKEIYAKP
LPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMDSIKRDYPKVDANYYKGRDIYQCLLFCDESYDAYYREE
FKQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMEDTYAFGDGLNDIAMLQAVGTGVAMGNGRDEVKAVADYVTDH
VDEDGVYKALEHLKLI

Sequences:

>Translated_256_residues
MSKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINSYICYNGQYVIFEGKEIYAKP
LPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMDSIKRDYPKVDANYYKGRDIYQCLLFCDESYDAYYREE
FKQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMEDTYAFGDGLNDIAMLQAVGTGVAMGNGRDEVKAVADYVTDH
VDEDGVYKALEHLKLI
>Mature_255_residues
SKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINSYICYNGQYVIFEGKEIYAKPL
PTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMDSIKRDYPKVDANYYKGRDIYQCLLFCDESYDAYYREEF
KQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMEDTYAFGDGLNDIAMLQAVGTGVAMGNGRDEVKAVADYVTDHV
DEDGVYKALEHLKLI

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI1786982, Length=258, Percent_Identity=30.6201550387597, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI2367265, Length=264, Percent_Identity=28.4090909090909, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48994981, Length=245, Percent_Identity=26.9387755102041, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081790, Length=271, Percent_Identity=25.830258302583, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 28775; Mature: 28644

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINS
CCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCC
YICYNGQYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTI
EEEECCEEEEEECCEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEE
GMDSIKRDYPKVDANYYKGRDIYQCLLFCDESYDAYYREEFKQYGFLRWHDVSVDVCPAD
EHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECEEEEECCC
GSKAEGIKQMIKKLGFSMEDTYAFGDGLNDIAMLQAVGTGVAMGNGRDEVKAVADYVTDH
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCCHHHHHHHHHHHHHC
VDEDGVYKALEHLKLI
CCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINS
CEEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCC
YICYNGQYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTI
EEEECCEEEEEECCEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEE
GMDSIKRDYPKVDANYYKGRDIYQCLLFCDESYDAYYREEFKQYGFLRWHDVSVDVCPAD
EHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECEEEEECCC
GSKAEGIKQMIKKLGFSMEDTYAFGDGLNDIAMLQAVGTGVAMGNGRDEVKAVADYVTDH
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCCHHHHHHHHHHHHHC
VDEDGVYKALEHLKLI
CCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]