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The map label for this gene is tdcF [C]

Identifier: 226223462

GI number: 226223462

Start: 882694

End: 883071

Strand: Direct

Name: tdcF [C]

Synonym: Lm4b_00860

Alternate gene names: 226223462

Gene position: 882694-883071 (Clockwise)

Preceding gene: 226223460

Following gene: 226223463

Centisome position: 30.31

GC content: 39.42

Gene sequence:

>378_bases
ATGGCAAAAGAAATTATTCAAACATCGTCAGCCCCAAAAGCACTTGGACCATACTCGCAAGCTGTAAAAGTGAATGGACT
TATTTTTACATCAGGTCAACTCGGTATTAACCCGGAAACCGGCGAATTAGCAGATGGCACGACAAAACAAGCCGAGCAAG
CTTTTAAAAATATAGCAGCAGTATTAGCAGAAGCTGGTTCTGGACTGGACAAAATTATTAAAGCAACTGTTTTCTTCAAA
GATTTAAATGAATTTAAGGCCGTGAATGAAGTGTATGCGACATTCTTTTCTAGTGATTTTCCCGCGAGAAGTGCTTTCCA
AGTAGCAAAATTACCGCTTGATGCTGCAATTGAAATCGAAGTTATCGCAGAAGCATAA

Upstream 100 bases:

>100_bases
TAAATATATCGTTAAAATCATTTAGAAAATCCCCCTTCATTGCTAAAACAAACTTTATTGATTAGAATAAAAGCATACCA
TAAAAGAAAGCAGGGATAAA

Downstream 100 bases:

>100_bases
ATATTCAGAAATAAATTTGACAACCACAAGAAATAAACGATATAATAAGAACCAATTACATAGCAACTTATCAAGAAAGG
TGGAGGGTTCTGGCCCCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MAKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPETGELADGTTKQAEQAFKNIAAVLAEAGSGLDKIIKATVFFK
DLNEFKAVNEVYATFFSSDFPARSAFQVAKLPLDAAIEIEVIAEA

Sequences:

>Translated_125_residues
MAKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPETGELADGTTKQAEQAFKNIAAVLAEAGSGLDKIIKATVFFK
DLNEFKAVNEVYATFFSSDFPARSAFQVAKLPLDAAIEIEVIAEA
>Mature_124_residues
AKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPETGELADGTTKQAEQAFKNIAAVLAEAGSGLDKIIKATVFFKD
LNEFKAVNEVYATFFSSDFPARSAFQVAKLPLDAAIEIEVIAEA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=45.9677419354839, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=45.9677419354839, Blast_Score=119, Evalue=6e-29,
Organism=Escherichia coli, GI87082396, Length=121, Percent_Identity=47.9338842975207, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=29.6, Blast_Score=68, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=44.7154471544715, Blast_Score=126, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=44.7154471544715, Blast_Score=126, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=44.7154471544715, Blast_Score=126, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=42.3728813559322, Blast_Score=105, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=42.156862745098, Blast_Score=91, Evalue=5e-20,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=53.2258064516129, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13226; Mature: 13095

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPETGELADGTTKQAEQAFKNIAA
CCCHHHHCCCCCCCCCCCCHHEEECEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
VLAEAGSGLDKIIKATVFFKDLNEFKAVNEVYATFFSSDFPARSAFQVAKLPLDAAIEIE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEE
VIAEA
EEECC
>Mature Secondary Structure 
AKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPETGELADGTTKQAEQAFKNIAA
CCHHHHCCCCCCCCCCCCHHEEECEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
VLAEAGSGLDKIIKATVFFKDLNEFKAVNEVYATFFSSDFPARSAFQVAKLPLDAAIEIE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEE
VIAEA
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]