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The map label for this gene is ygdD [C]

Identifier: 226223296

GI number: 226223296

Start: 712446

End: 712823

Strand: Direct

Name: ygdD [C]

Synonym: Lm4b_00693

Alternate gene names: 226223296

Gene position: 712446-712823 (Clockwise)

Preceding gene: 226223295

Following gene: 226223297

Centisome position: 24.46

GC content: 40.74

Gene sequence:

>378_bases
ATGAAAAAAACAATTATTACGGGAGCCATTTTTGCAGGGCTGGCAGTTTTACTAGGGGCTTTTGGGGCACATGCTTTAAA
AGACGTACTTGGAAGTTATGCGAGTACTTGGGAAACCGGCGTTCAGTACCAAATGTTTCACGCAGGAGGCATTTTAGTTG
TAGGGCTATTGATGGAAAAACAAGCTAGTCGGCTTTACACATGGGCAGCGATTTTATTTTCGGTCGGAATTGTCTTTTTC
TCGGGTAGTTTGTATGTGTTAAGTATTTCTAAAGTATCCATTTTAGGTGCGATTACGCCTATCGGTGGTGTTTGCTTTGT
CGTTGGTTGGTTCTTGCTAATTTTAGGAGTATCAAGAAGAACGATGAGTAGATATTAA

Upstream 100 bases:

>100_bases
GTCAGCAGAACCGGCGCAAATTGCAAGTATGGACGGGAAGAAAATAGAGTTAGAAGACGGCGCGAACGGAGACTCGTTGC
TTGATTTTTAGGGGGTAACT

Downstream 100 bases:

>100_bases
ATCAAAATAATCGTCTTTTCGCGTTCATTTCAGTGAAAAGACGATTGTTTTTTCTTATTGGCAAATAAGTGCTAAAATAA
AGGAATCATAATTTATAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKKTIITGAIFAGLAVLLGAFGAHALKDVLGSYASTWETGVQYQMFHAGGILVVGLLMEKQASRLYTWAAILFSVGIVFF
SGSLYVLSISKVSILGAITPIGGVCFVVGWFLLILGVSRRTMSRY

Sequences:

>Translated_125_residues
MKKTIITGAIFAGLAVLLGAFGAHALKDVLGSYASTWETGVQYQMFHAGGILVVGLLMEKQASRLYTWAAILFSVGIVFF
SGSLYVLSISKVSILGAITPIGGVCFVVGWFLLILGVSRRTMSRY
>Mature_125_residues
MKKTIITGAIFAGLAVLLGAFGAHALKDVLGSYASTWETGVQYQMFHAGGILVVGLLMEKQASRLYTWAAILFSVGIVFF
SGSLYVLSISKVSILGAITPIGGVCFVVGWFLLILGVSRRTMSRY

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=115, Percent_Identity=40.8695652173913, Blast_Score=88, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13368; Mature: 13368

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTIITGAIFAGLAVLLGAFGAHALKDVLGSYASTWETGVQYQMFHAGGILVVGLLMEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
QASRLYTWAAILFSVGIVFFSGSLYVLSISKVSILGAITPIGGVCFVVGWFLLILGVSRR
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
TMSRY
HHCCC
>Mature Secondary Structure
MKKTIITGAIFAGLAVLLGAFGAHALKDVLGSYASTWETGVQYQMFHAGGILVVGLLMEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
QASRLYTWAAILFSVGIVFFSGSLYVLSISKVSILGAITPIGGVCFVVGWFLLILGVSRR
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
TMSRY
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA