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The map label for this gene is ykgB [H]

Identifier: 226223187

GI number: 226223187

Start: 600226

End: 601266

Strand: Reverse

Name: ykgB [H]

Synonym: Lm4b_00584

Alternate gene names: 226223187

Gene position: 601266-600226 (Counterclockwise)

Preceding gene: 226223189

Following gene: 226223182

Centisome position: 20.64

GC content: 39.19

Gene sequence:

>1041_bases
ATGTCAAAAAATCAAGCAACTGCTTATATCGGTACATATACCAAAGCCGAGAGCCAAGGTATCTATCGCTTAGTAATCGA
CAAAACTACCGGCGAAATCAAAGAAAATAAATTAGCTGGAAAAATGGACAATCCAACATATCTTAAAATTTCAGATGATG
AAAAATTCGTTTACTCTGTAGCAAAAGATGGCGATAAAGGTGGAGTTGCAGCTTTTTCTGTGGAAGAAGACGGTTCGCTT
ACTTTCATTAATCAAGATGTTCAAACAGGTAACCCACCATGTTACGTAGATGCCTCTCATGACGGTTCTATCGTTGTATC
TGCAAACTATCACTTAGGCACAATCGTAAGCTATCCAACAGAAAACGGTGCATTAAAGTCTTCTGTCTCTACCATTCAAC
ATACTGGTAAAAGTGTTCACGAACGCCAAGAAAAACCACACGCGCACTTTGCAGGATTCACACCAGACCAAAAATACGTT
ATCACATGTGACCTTGGAACAGACAAAGTAACGACTTATTCCGCTACTGCTGGCAAACTTGAAAAAGTAACTGAGCTAGA
CGTAAAACCTGGAAGCGGTCCTCGTAACCTAGTCTTCCATCCAAATGCTAAATATGTGTACATCATGACAGAATTAACTT
CCGAAGTTATTTTTGCTGAATATGATGAAGCTACTGGCGCATTAAACGTGATTCAAACAATTGCTTCTCTTCCAGAAGGT
TTTGACAAAGAAAATAAAGGTAGCGCTATCCATATTTCTCCAGATGGTCGTTTCCTATATGTGTCAAATCGTGGCCAAGA
TGCCATCGTTAGTTATGCAGTTGCTGAAAACGGCACACTAACACTTGCAGCAACAACACCAGTAGAAGGCGTAGGTCCAC
GTGACTTCGACCTGAACTACACTGGTGAAATCTTAGTTGCAACAAACGAAAACAGCAATAACGTTACTGTTTTTGGTGTT
AACAAAGAAACTGGTGCACTTACATTACTTCAAAAAGATGTAAAAGTTCCTGAACCAGTTTGTATTAAATTCGTAAAATA
A

Upstream 100 bases:

>100_bases
ACAATTTGTAACATTAATGCAATAATCGTGATATTTTTCTATCTTTTCTTTACTATGCTATAATTAACTAGGAAATATCT
TATATATAGGAGGAATTGGC

Downstream 100 bases:

>100_bases
CTTAAAAAATCCAGAATGGCCTCAGTGCCATTCTGGATTTTTTATACTAAAACTAATTTACCTGCTTCAATGTAACTTAA
ATCATTCACTGTCTCAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MSKNQATAYIGTYTKAESQGIYRLVIDKTTGEIKENKLAGKMDNPTYLKISDDEKFVYSVAKDGDKGGVAAFSVEEDGSL
TFINQDVQTGNPPCYVDASHDGSIVVSANYHLGTIVSYPTENGALKSSVSTIQHTGKSVHERQEKPHAHFAGFTPDQKYV
ITCDLGTDKVTTYSATAGKLEKVTELDVKPGSGPRNLVFHPNAKYVYIMTELTSEVIFAEYDEATGALNVIQTIASLPEG
FDKENKGSAIHISPDGRFLYVSNRGQDAIVSYAVAENGTLTLAATTPVEGVGPRDFDLNYTGEILVATNENSNNVTVFGV
NKETGALTLLQKDVKVPEPVCIKFVK

Sequences:

>Translated_346_residues
MSKNQATAYIGTYTKAESQGIYRLVIDKTTGEIKENKLAGKMDNPTYLKISDDEKFVYSVAKDGDKGGVAAFSVEEDGSL
TFINQDVQTGNPPCYVDASHDGSIVVSANYHLGTIVSYPTENGALKSSVSTIQHTGKSVHERQEKPHAHFAGFTPDQKYV
ITCDLGTDKVTTYSATAGKLEKVTELDVKPGSGPRNLVFHPNAKYVYIMTELTSEVIFAEYDEATGALNVIQTIASLPEG
FDKENKGSAIHISPDGRFLYVSNRGQDAIVSYAVAENGTLTLAATTPVEGVGPRDFDLNYTGEILVATNENSNNVTVFGV
NKETGALTLLQKDVKVPEPVCIKFVK
>Mature_345_residues
SKNQATAYIGTYTKAESQGIYRLVIDKTTGEIKENKLAGKMDNPTYLKISDDEKFVYSVAKDGDKGGVAAFSVEEDGSLT
FINQDVQTGNPPCYVDASHDGSIVVSANYHLGTIVSYPTENGALKSSVSTIQHTGKSVHERQEKPHAHFAGFTPDQKYVI
TCDLGTDKVTTYSATAGKLEKVTELDVKPGSGPRNLVFHPNAKYVYIMTELTSEVIFAEYDEATGALNVIQTIASLPEGF
DKENKGSAIHISPDGRFLYVSNRGQDAIVSYAVAENGTLTLAATTPVEGVGPRDFDLNYTGEILVATNENSNNVTVFGVN
KETGALTLLQKDVKVPEPVCIKFVK

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=285, Percent_Identity=27.719298245614, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 37367; Mature: 37236

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNQATAYIGTYTKAESQGIYRLVIDKTTGEIKENKLAGKMDNPTYLKISDDEKFVYSV
CCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEECCCCEEEEEE
AKDGDKGGVAAFSVEEDGSLTFINQDVQTGNPPCYVDASHDGSIVVSANYHLGTIVSYPT
ECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCEEEEECCCEEEEEECCC
ENGALKSSVSTIQHTGKSVHERQEKPHAHFAGFTPDQKYVITCDLGTDKVTTYSATAGKL
CCCCHHHHHHHHHHCCHHHHHHHCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCC
EKVTELDVKPGSGPRNLVFHPNAKYVYIMTELTSEVIFAEYDEATGALNVIQTIASLPEG
CEEEEEECCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC
FDKENKGSAIHISPDGRFLYVSNRGQDAIVSYAVAENGTLTLAATTPVEGVGPRDFDLNY
CCCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC
TGEILVATNENSNNVTVFGVNKETGALTLLQKDVKVPEPVCIKFVK
CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEEECC
>Mature Secondary Structure 
SKNQATAYIGTYTKAESQGIYRLVIDKTTGEIKENKLAGKMDNPTYLKISDDEKFVYSV
CCCCEEEEEEEEECCCCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEECCCCEEEEEE
AKDGDKGGVAAFSVEEDGSLTFINQDVQTGNPPCYVDASHDGSIVVSANYHLGTIVSYPT
ECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCEEEEECCCEEEEEECCC
ENGALKSSVSTIQHTGKSVHERQEKPHAHFAGFTPDQKYVITCDLGTDKVTTYSATAGKL
CCCCHHHHHHHHHHCCHHHHHHHCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCC
EKVTELDVKPGSGPRNLVFHPNAKYVYIMTELTSEVIFAEYDEATGALNVIQTIASLPEG
CEEEEEECCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC
FDKENKGSAIHISPDGRFLYVSNRGQDAIVSYAVAENGTLTLAATTPVEGVGPRDFDLNY
CCCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC
TGEILVATNENSNNVTVFGVNKETGALTLLQKDVKVPEPVCIKFVK
CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]