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The map label for this gene is yfmC [H]

Identifier: 226223170

GI number: 226223170

Start: 583754

End: 584674

Strand: Reverse

Name: yfmC [H]

Synonym: Lm4b_00567

Alternate gene names: 226223170

Gene position: 584674-583754 (Counterclockwise)

Preceding gene: 226223171

Following gene: 226223168

Centisome position: 20.07

GC content: 38.0

Gene sequence:

>921_bases
ATGTACCAAAAGCATAAATGGGCTGCTATTTTGATGACTGTGCTTTTAGCAGTAGTATTAACCGCTTGTGGCAGTTCTTC
GGATAAAGACTCAAGCAAAGAAAAGGAATCCGCAACAAAAACGGTCACTGATACAATGGACCGTAAAGTAGAAGTTCCAA
CAACACCGAAAAGAATTGTCGCACTTCAAAATGTAAGTGAAATGGAAATTCTTGGCGTTAAACCTGTTGGTACAACTGAT
TATTACATCACTACATACCCTGAGGCAACAAAAGGGACCGAAAGTGTTGGTAATGACAAACCTAGTATTGAAAAAATCGC
TAATTTAAAACCAGACTTAATTATTATTAGTGATTACCAAAAGGATCTTTTAGAGAACTTGGAAAAAGTGGCTCCTGTTT
ATATCACGCATTTTGGTGATACTCCGGACAAACAACTTTCGAACATTGCCAATCTCTTAAATAAAAAAGCAGAAAAAGAA
AAATGGGACAAAGATTACGCGGCAAGCTCTAAAGAAGCAAAAGCAACACTCAAAGATGCTGGTGTTGCGAACGAAAAAGC
GGCAGTAATTCAATTTTATGGCAAAGAAATCTATGTGCACGATGCAAAAGTCTTTGACGGCTTATACTCCGGCGCAGGTT
TCACACCGACAGATGCTGCTAAAGCAAACAAAGAAACAAAAGCTATTTCTAGTGAAGCAATTCCTGAATATGCAGCAGGA
GCAGATCGTCTCTTTATCTTAATGCCAGCTGATGGCAATACCGATTCTGTGGATGAAATGCTAAAAGGTGTTTGGAAAGA
TATTCCAGCTGTGAAGAAAAACCAAGTGTATAAAGTGGATAATACTAAATGGAGTGACTACAGTGCCTCTGCTCAACTTT
ATCAAATGGAAGATGCTGTAAAACAAATTACTGGTAAATAA

Upstream 100 bases:

>100_bases
TTTTTGTGCTACATTTCACCTTGTCAATCCTCCCTGTTTTCGATATAATTACTTTTGTAACGATAATGAAAATCATTTTC
AATTAGGGAGGAAATACACA

Downstream 100 bases:

>100_bases
TAAAAAAACCCGATTCTACAAATAGAATCGGTTTTTTTTATTATTTATTTAAGAAACCATAAATATCATTATTCACTTTT
CCGAATGAAGCAATGTGGTT

Product: ABC transporter (binding protein)

Products: NA

Alternate protein names: Ferric-citrate-binding protein [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATKTVTDTMDRKVEVPTTPKRIVALQNVSEMEILGVKPVGTTD
YYITTYPEATKGTESVGNDKPSIEKIANLKPDLIIISDYQKDLLENLEKVAPVYITHFGDTPDKQLSNIANLLNKKAEKE
KWDKDYAASSKEAKATLKDAGVANEKAAVIQFYGKEIYVHDAKVFDGLYSGAGFTPTDAAKANKETKAISSEAIPEYAAG
ADRLFILMPADGNTDSVDEMLKGVWKDIPAVKKNQVYKVDNTKWSDYSASAQLYQMEDAVKQITGK

Sequences:

>Translated_306_residues
MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATKTVTDTMDRKVEVPTTPKRIVALQNVSEMEILGVKPVGTTD
YYITTYPEATKGTESVGNDKPSIEKIANLKPDLIIISDYQKDLLENLEKVAPVYITHFGDTPDKQLSNIANLLNKKAEKE
KWDKDYAASSKEAKATLKDAGVANEKAAVIQFYGKEIYVHDAKVFDGLYSGAGFTPTDAAKANKETKAISSEAIPEYAAG
ADRLFILMPADGNTDSVDEMLKGVWKDIPAVKKNQVYKVDNTKWSDYSASAQLYQMEDAVKQITGK
>Mature_306_residues
MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATKTVTDTMDRKVEVPTTPKRIVALQNVSEMEILGVKPVGTTD
YYITTYPEATKGTESVGNDKPSIEKIANLKPDLIIISDYQKDLLENLEKVAPVYITHFGDTPDKQLSNIANLLNKKAEKE
KWDKDYAASSKEAKATLKDAGVANEKAAVIQFYGKEIYVHDAKVFDGLYSGAGFTPTDAAKANKETKAISSEAIPEYAAG
ADRLFILMPADGNTDSVDEMLKGVWKDIPAVKKNQVYKVDNTKWSDYSASAQLYQMEDAVKQITGK

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33622; Mature: 33622

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATKTVTDTMDRKVEVPTTPKRIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCHHHHE
ALQNVSEMEILGVKPVGTTDYYITTYPEATKGTESVGNDKPSIEKIANLKPDLIIISDYQ
ECCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHCCCCCCHHHHHHCCCCCEEEECHHH
KDLLENLEKVAPVYITHFGDTPDKQLSNIANLLNKKAEKEKWDKDYAASSKEAKATLKDA
HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GVANEKAAVIQFYGKEIYVHDAKVFDGLYSGAGFTPTDAAKANKETKAISSEAIPEYAAG
CCCCCCHHEEEEECCEEEEEHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHCCHHHHCC
ADRLFILMPADGNTDSVDEMLKGVWKDIPAVKKNQVYKVDNTKWSDYSASAQLYQMEDAV
CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH
KQITGK
HHHCCC
>Mature Secondary Structure
MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATKTVTDTMDRKVEVPTTPKRIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCHHHHE
ALQNVSEMEILGVKPVGTTDYYITTYPEATKGTESVGNDKPSIEKIANLKPDLIIISDYQ
ECCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHCCCCCCHHHHHHCCCCCEEEECHHH
KDLLENLEKVAPVYITHFGDTPDKQLSNIANLLNKKAEKEKWDKDYAASSKEAKATLKDA
HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GVANEKAAVIQFYGKEIYVHDAKVFDGLYSGAGFTPTDAAKANKETKAISSEAIPEYAAG
CCCCCCHHEEEEECCEEEEEHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHCCHHHHCC
ADRLFILMPADGNTDSVDEMLKGVWKDIPAVKKNQVYKVDNTKWSDYSASAQLYQMEDAV
CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH
KQITGK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]