| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is 226222725
Identifier: 226222725
GI number: 226222725
Start: 95876
End: 98185
Strand: Direct
Name: 226222725
Synonym: Lm4b_00090
Alternate gene names: NA
Gene position: 95876-98185 (Clockwise)
Preceding gene: 226222724
Following gene: 226222726
Centisome position: 3.29
GC content: 35.54
Gene sequence:
>2310_bases ATGAAACCTACATGGAAAATAGGGATAATCGTTGCAGCTGTTCCGTTAATAATTATTGCTGTCGTCTTATGGGGGTCTTT TAAGGAGGCAAGGTATAATCTTGTCTCTCTCCCTGATGACGGTGTAGTCCTAAATAATGAGCAAGAGACATTGCAATTTC AAAAGGGCAATACGCTTTATCGCAGTTGGAATAGTGATCAATTAATTGCGAAAAACGATAAAGAAGATACTCGAAACGAA ATTATGGAGAGTACCATCCTTTATCTAAATAAAGAAGCCTTAATGTTTACTAAGAGTGTTCCCGTCATTGATACAAATGG GGTTAGTAGCAAACTAAAAGGAAGACAAGTCTACCAACAGACCAATTCTTCCTATAAATACAAAAACTCAGAAATCACGG AAAACAGTATTGTAAAACTAGCAAACCGTCAATACTATTTAAACGCAGATGCAACACTTTATCTTGGCGGCAAAGAAATC AAAAAAGTGTCGAAACCATTACTTTTGATTGATAAAACAGGAAGCGTCACTATTTATGAAAACAAAAAGAAAAGCCGTTT TCTTGGTCATATGACCTTGAAAGTCAATGATAAAACGGTTTTAGATGCTAGTAACGAAACGTATACTGTCGGCGAACGGA AAATTGATTTAGCTAGCTTTGGTGGAACAGACAATGAAAAGATAGTCGTAAAAGAAGATAAGAAAAAGACCGCAGAATCT GCGAAAGAAAAAGAGTCTGCGAAGAAAACAGCAAGTAACTCCTCTCAATCAGAAAATGAAAGTAACCAAACAACAAAAGG TACAGGCAATCAACTCAATGCTACCAAAAAATACGGAAATAATTTAAATGTTGGAAATGGAACTTCTGATTCGGAACCAA ACGATGGTAAGGATACTAAAAATAATGGTTCAGGAAGTAATGCGAATGGTGGTACTAATCAATCAGATTTAAATGAAATT GATAATTATGAAGCAATCTTACGTAAAATAGAGGACTTAAATAAAAAATTAGAGCGAAACATTCCAGTGCTAAGAATCGG CTATATCGCACCTGGAGTGACTAGCGTGAAAGTCAACTATAACTATGTAGATCCGAATAACACTTTAATTGGTGTCACTA AAATTAGCGCCGTAGATGAAAAAACTGGAAAAACAGTTAATACGCAATATGTTTCAGCAGTAGATACGGAAGCTACACTA AAAGGACTTTCGCCAAATGGCAAGTATCATCTTGAATTTACCTATCAATATGATTTAGGAACAAATAAAGGCATTCAGGA AGTTAAAATGCAAAGCGACTCTTTTACAACGCAAACTGTTGCCGCAATTTATCAAATGCAAAGCGTTACAAGCACAACAA TGAAAGTAAATATAGCGCTTGATGCACAAATTGATGATGTTAAACGAGCAAGAATTAAAGTAACCAAAGCAGATGGAGAT TTTTTCTATATGAATGTTAGTGCGAATTTTTTAAATGGTAACGGAGAAACGCTTAATGTAACTGGGCTAAGTCCTAAAAC TGCTTACCAATTCCAAACGATTATTGAAATGAAAAACGGAGAAACCATTGAATTAAACAGCTCCGAGAAATATTACACTA TGCAAGCAACTGTACTAAGAAATCTAAGAGCTAGTCAATCTGTGAATAAAGTTTTACAAGTGCAATATGATTGGAGTTCG GCTGATTATACATTAAATCAAGCAACCATCGAACTGGAAGACGAGGAAGATAAAACAGAAGTAGATTATCAAATCGTTAA TCAAGAAAAAGGTAATATTCATCTTGTTCCAGACACGAAAAGGGAGTTAATCAACTTAAAAGCCAAACTAGTACTCAAAA CGACAAATAATAACACAAAAGAAAGCAAAACATTTGAGTATCCTGTTAAGCAAGAAATTGAATACGACAAACAAGCTAAA CTAACAATGGACTTAACGCCGTTTCAAACTGAAGAAAACAGTGAGTTACAGTCTGAAAAACAAGATGTAGTAGCAGAGAA AGAAACGAACGGAAATGATTTAACAGCTAAGATGGAAGATGTTTTAGCCCCTCAAAACGCAACTTATGATATGTCCTTTT CGATGCAACGTAAAGCTCTCGAAACGTATCAGTTGGAATTTGAAAGGAAGATAGCTGGGATAGACGATGATAATTGGACC GTGTGGAAGAGTCAACAAGTTACAACGGATGAAGCAGGGCAAGTGAAGGTTACAGAAACCATTTCAAAACTAGCTAAAGA AAGCTTCGATTATCGTGTAGCTGTATACGATGCGCAAGGTGCATTACAACTGTACGTTTATCAAAAGTAG
Upstream 100 bases:
>100_bases CAGGTGTGAAAATTGATGAAAATTATCAAGACACTAAAGTTACTGTCGAAGAAACAAAATCAGGAAAGAATTTTGGAATT ATTGAATTGGAGGAGAGCAA
Downstream 100 bases:
>100_bases TAAAAAATGATATGCATTTTAATACAACAAACTCAAACAGAAGGTAGGAAACAACAATGGATTTAGTAGTTGCATGTAGC GTAATTGGCGCGGCACTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVLNNEQETLQFQKGNTLYRSWNSDQLIAKNDKEDTRNE IMESTILYLNKEALMFTKSVPVIDTNGVSSKLKGRQVYQQTNSSYKYKNSEITENSIVKLANRQYYLNADATLYLGGKEI KKVSKPLLLIDKTGSVTIYENKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLASFGGTDNEKIVVKEDKKKTAES AKEKESAKKTASNSSQSENESNQTTKGTGNQLNATKKYGNNLNVGNGTSDSEPNDGKDTKNNGSGSNANGGTNQSDLNEI DNYEAILRKIEDLNKKLERNIPVLRIGYIAPGVTSVKVNYNYVDPNNTLIGVTKISAVDEKTGKTVNTQYVSAVDTEATL KGLSPNGKYHLEFTYQYDLGTNKGIQEVKMQSDSFTTQTVAAIYQMQSVTSTTMKVNIALDAQIDDVKRARIKVTKADGD FFYMNVSANFLNGNGETLNVTGLSPKTAYQFQTIIEMKNGETIELNSSEKYYTMQATVLRNLRASQSVNKVLQVQYDWSS ADYTLNQATIELEDEEDKTEVDYQIVNQEKGNIHLVPDTKRELINLKAKLVLKTTNNNTKESKTFEYPVKQEIEYDKQAK LTMDLTPFQTEENSELQSEKQDVVAEKETNGNDLTAKMEDVLAPQNATYDMSFSMQRKALETYQLEFERKIAGIDDDNWT VWKSQQVTTDEAGQVKVTETISKLAKESFDYRVAVYDAQGALQLYVYQK
Sequences:
>Translated_769_residues MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVLNNEQETLQFQKGNTLYRSWNSDQLIAKNDKEDTRNE IMESTILYLNKEALMFTKSVPVIDTNGVSSKLKGRQVYQQTNSSYKYKNSEITENSIVKLANRQYYLNADATLYLGGKEI KKVSKPLLLIDKTGSVTIYENKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLASFGGTDNEKIVVKEDKKKTAES AKEKESAKKTASNSSQSENESNQTTKGTGNQLNATKKYGNNLNVGNGTSDSEPNDGKDTKNNGSGSNANGGTNQSDLNEI DNYEAILRKIEDLNKKLERNIPVLRIGYIAPGVTSVKVNYNYVDPNNTLIGVTKISAVDEKTGKTVNTQYVSAVDTEATL KGLSPNGKYHLEFTYQYDLGTNKGIQEVKMQSDSFTTQTVAAIYQMQSVTSTTMKVNIALDAQIDDVKRARIKVTKADGD FFYMNVSANFLNGNGETLNVTGLSPKTAYQFQTIIEMKNGETIELNSSEKYYTMQATVLRNLRASQSVNKVLQVQYDWSS ADYTLNQATIELEDEEDKTEVDYQIVNQEKGNIHLVPDTKRELINLKAKLVLKTTNNNTKESKTFEYPVKQEIEYDKQAK LTMDLTPFQTEENSELQSEKQDVVAEKETNGNDLTAKMEDVLAPQNATYDMSFSMQRKALETYQLEFERKIAGIDDDNWT VWKSQQVTTDEAGQVKVTETISKLAKESFDYRVAVYDAQGALQLYVYQK >Mature_769_residues MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVLNNEQETLQFQKGNTLYRSWNSDQLIAKNDKEDTRNE IMESTILYLNKEALMFTKSVPVIDTNGVSSKLKGRQVYQQTNSSYKYKNSEITENSIVKLANRQYYLNADATLYLGGKEI KKVSKPLLLIDKTGSVTIYENKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLASFGGTDNEKIVVKEDKKKTAES AKEKESAKKTASNSSQSENESNQTTKGTGNQLNATKKYGNNLNVGNGTSDSEPNDGKDTKNNGSGSNANGGTNQSDLNEI DNYEAILRKIEDLNKKLERNIPVLRIGYIAPGVTSVKVNYNYVDPNNTLIGVTKISAVDEKTGKTVNTQYVSAVDTEATL KGLSPNGKYHLEFTYQYDLGTNKGIQEVKMQSDSFTTQTVAAIYQMQSVTSTTMKVNIALDAQIDDVKRARIKVTKADGD FFYMNVSANFLNGNGETLNVTGLSPKTAYQFQTIIEMKNGETIELNSSEKYYTMQATVLRNLRASQSVNKVLQVQYDWSS ADYTLNQATIELEDEEDKTEVDYQIVNQEKGNIHLVPDTKRELINLKAKLVLKTTNNNTKESKTFEYPVKQEIEYDKQAK LTMDLTPFQTEENSELQSEKQDVVAEKETNGNDLTAKMEDVLAPQNATYDMSFSMQRKALETYQLEFERKIAGIDDDNWT VWKSQQVTTDEAGQVKVTETISKLAKESFDYRVAVYDAQGALQLYVYQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86269; Mature: 86269
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVLNNEQETLQFQKGNTLY CCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCHHEEEEECCCEEE RSWNSDQLIAKNDKEDTRNEIMESTILYLNKEALMFTKSVPVIDTNGVSSKLKGRQVYQQ EECCCCCEEECCCCHHHHHHHHHHHHEEEECCEEEEECCCCEEECCCCCHHHCHHHHHHH TNSSYKYKNSEITENSIVKLANRQYYLNADATLYLGGKEIKKVSKPLLLIDKTGSVTIYE CCCCEEECCCCCCHHHHHEEECCEEEECCCEEEEECCHHHHHHCCCEEEEECCCCEEEEE NKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLASFGGTDNEKIVVKEDKKKTAES CCCCCEEEEEEEEEECCCEEEECCCCEEEECCEEEEEEECCCCCCCEEEEECCHHHHHHH AKEKESAKKTASNSSQSENESNQTTKGTGNQLNATKKYGNNLNVGNGTSDSEPNDGKDTK HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC NNGSGSNANGGTNQSDLNEIDNYEAILRKIEDLNKKLERNIPVLRIGYIAPGVTSVKVNY CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEE NYVDPNNTLIGVTKISAVDEKTGKTVNTQYVSAVDTEATLKGLSPNGKYHLEFTYQYDLG EEECCCCCEEEEEEEEECHHHCCCEECEEEEEEECCHHHEECCCCCCEEEEEEEEEEECC TNKGIQEVKMQSDSFTTQTVAAIYQMQSVTSTTMKVNIALDAQIDDVKRARIKVTKADGD CCCCHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCEEEEEEEECCCC FFYMNVSANFLNGNGETLNVTGLSPKTAYQFQTIIEMKNGETIELNSSEKYYTMQATVLR EEEEEEEEEEECCCCCEEEEECCCCCHHHEEEEEEEECCCCEEEECCCCCEEEEHHHHHH NLRASQSVNKVLQVQYDWSSADYTLNQATIELEDEEDKTEVDYQIVNQEKGNIHLVPDTK HHHHHHHHCEEEEEEECCCCCCEEEEEEEEEEECCCCCCEECEEEECCCCCCEEECCCCH RELINLKAKLVLKTTNNNTKESKTFEYPVKQEIEYDKQAKLTMDLTPFQTEENSELQSEK HHHHCCEEEEEEEECCCCCCCCCEEECCCHHHCCCCCCCEEEEECCCCCCCCCCHHHHHH QDVVAEKETNGNDLTAKMEDVLAPQNATYDMSFSMQRKALETYQLEFERKIAGIDDDNWT HHHHEECCCCCCCEEEEHHHHCCCCCCEEEEEHHHHHHHHHHHHEEEEHHCCCCCCCCEE VWKSQQVTTDEAGQVKVTETISKLAKESFDYRVAVYDAQGALQLYVYQK EEECCEECCCCCCCEEHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEEC >Mature Secondary Structure MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVLNNEQETLQFQKGNTLY CCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCHHEEEEECCCEEE RSWNSDQLIAKNDKEDTRNEIMESTILYLNKEALMFTKSVPVIDTNGVSSKLKGRQVYQQ EECCCCCEEECCCCHHHHHHHHHHHHEEEECCEEEEECCCCEEECCCCCHHHCHHHHHHH TNSSYKYKNSEITENSIVKLANRQYYLNADATLYLGGKEIKKVSKPLLLIDKTGSVTIYE CCCCEEECCCCCCHHHHHEEECCEEEECCCEEEEECCHHHHHHCCCEEEEECCCCEEEEE NKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLASFGGTDNEKIVVKEDKKKTAES CCCCCEEEEEEEEEECCCEEEECCCCEEEECCEEEEEEECCCCCCCEEEEECCHHHHHHH AKEKESAKKTASNSSQSENESNQTTKGTGNQLNATKKYGNNLNVGNGTSDSEPNDGKDTK HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC NNGSGSNANGGTNQSDLNEIDNYEAILRKIEDLNKKLERNIPVLRIGYIAPGVTSVKVNY CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEE NYVDPNNTLIGVTKISAVDEKTGKTVNTQYVSAVDTEATLKGLSPNGKYHLEFTYQYDLG EEECCCCCEEEEEEEEECHHHCCCEECEEEEEEECCHHHEECCCCCCEEEEEEEEEEECC TNKGIQEVKMQSDSFTTQTVAAIYQMQSVTSTTMKVNIALDAQIDDVKRARIKVTKADGD CCCCHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCEEEEEEEECCCC FFYMNVSANFLNGNGETLNVTGLSPKTAYQFQTIIEMKNGETIELNSSEKYYTMQATVLR EEEEEEEEEEECCCCCEEEEECCCCCHHHEEEEEEEECCCCEEEECCCCCEEEEHHHHHH NLRASQSVNKVLQVQYDWSSADYTLNQATIELEDEEDKTEVDYQIVNQEKGNIHLVPDTK HHHHHHHHCEEEEEEECCCCCCEEEEEEEEEEECCCCCCEECEEEECCCCCCEEECCCCH RELINLKAKLVLKTTNNNTKESKTFEYPVKQEIEYDKQAKLTMDLTPFQTEENSELQSEK HHHHCCEEEEEEEECCCCCCCCCEEECCCHHHCCCCCCCEEEEECCCCCCCCCCHHHHHH QDVVAEKETNGNDLTAKMEDVLAPQNATYDMSFSMQRKALETYQLEFERKIAGIDDDNWT HHHHEECCCCCCCEEEEHHHHCCCCCCEEEEEHHHHHHHHHHHHEEEEHHCCCCCCCCEE VWKSQQVTTDEAGQVKVTETISKLAKESFDYRVAVYDAQGALQLYVYQK EEECCEECCCCCCCEEHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA