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The map label for this gene is ydgJ [H]

Identifier: 225861881

GI number: 225861881

Start: 1915327

End: 1915752

Strand: Reverse

Name: ydgJ [H]

Synonym: SPT_2057

Alternate gene names: 225861881

Gene position: 1915752-1915327 (Counterclockwise)

Preceding gene: 225861882

Following gene: 225861880

Centisome position: 90.7

GC content: 40.61

Gene sequence:

>426_bases
ATGCTAGAGATTCAAGATTTACTGTATCAACTCCGCTTGTCTGAGCAAGCGAGTACGCAATTGTTTGAAAAAAGGCTTGG
GATTAGTTTGACACGGTATCAGATTTTACTGTTTTTGCTGGAGCATTCTCCTTGTAACCAAATGGCGATTCAGGAGCGTT
TGAAAATTGATCAGGCTGCTTTGACACGGCATTTCAAGATTTTGGAAACGGAAGGTTTGGTGGAGCGTCATCGTAATCCT
GAAAATCAGCGGGAAGTGTTGGTAGAGGCTGCGAAGTATGCCAAGGAGCAGTTAGTGGTGAATCCCCCTCTGCAACATAT
CAAGGTTAAGGAAGAGATGGAAAGTATCTTAACAGAGTTTGAGAGAACAGAACTCAGCCGTTTATTAAATAAATTGGTTT
TGGGTATTGAAAATATAGAAATTTAA

Upstream 100 bases:

>100_bases
ATCTTGTAATGAGTTAAGCAACATTCTTGCAATCTATTTTACTTTATATCACAATTAATTAGTCAAATATTGATAAATCA
ATAAAAAGAGAGGGGAAGAA

Downstream 100 bases:

>100_bases
GGAGAAATAGATGTCAATTATTACAATTATTTTAACAACGATCGTTGCTTTGGAGCATTTTTACATTTTTTATTTGGAAA
GTATTGCTACGCGATCAGAT

Product: transcriptional regulator, MarR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MLEIQDLLYQLRLSEQASTQLFEKRLGISLTRYQILLFLLEHSPCNQMAIQERLKIDQAALTRHFKILETEGLVERHRNP
ENQREVLVEAAKYAKEQLVVNPPLQHIKVKEEMESILTEFERTELSRLLNKLVLGIENIEI

Sequences:

>Translated_141_residues
MLEIQDLLYQLRLSEQASTQLFEKRLGISLTRYQILLFLLEHSPCNQMAIQERLKIDQAALTRHFKILETEGLVERHRNP
ENQREVLVEAAKYAKEQLVVNPPLQHIKVKEEMESILTEFERTELSRLLNKLVLGIENIEI
>Mature_141_residues
MLEIQDLLYQLRLSEQASTQLFEKRLGISLTRYQILLFLLEHSPCNQMAIQERLKIDQAALTRHFKILETEGLVERHRNP
ENQREVLVEAAKYAKEQLVVNPPLQHIKVKEEMESILTEFERTELSRLLNKLVLGIENIEI

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16590; Mature: 16590

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIQDLLYQLRLSEQASTQLFEKRLGISLTRYQILLFLLEHSPCNQMAIQERLKIDQAA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LTRHFKILETEGLVERHRNPENQREVLVEAAKYAKEQLVVNPPLQHIKVKEEMESILTEF
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ERTELSRLLNKLVLGIENIEI
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLEIQDLLYQLRLSEQASTQLFEKRLGISLTRYQILLFLLEHSPCNQMAIQERLKIDQAA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LTRHFKILETEGLVERHRNPENQREVLVEAAKYAKEQLVVNPPLQHIKVKEEMESILTEF
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ERTELSRLLNKLVLGIENIEI
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]