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The map label for this gene is ygdK [C]

Identifier: 225852104

GI number: 225852104

Start: 588798

End: 589223

Strand: Reverse

Name: ygdK [C]

Synonym: BMEA_A0614

Alternate gene names: 225852104

Gene position: 589223-588798 (Counterclockwise)

Preceding gene: 225852105

Following gene: 225852100

Centisome position: 27.72

GC content: 59.62

Gene sequence:

>426_bases
ATGACGACCACCATCGATAGCATCATGTCCGATTTCGAGTTTCTCGACGATTGGGAAGACCGCTATCGCTACGTAATCGA
CCTCGGCAAGGAATTGCCGCCCTATCCCGACGATGCGCGCGATGCCGCGCATAAGGTGCAGGGCTGCGTGAGCCAGGTCT
GGCTGAAAACCCTGCCGCAGGATGGCAATGATCCGGTCATCGAATTTCTGGGCGATTCCGATGCGCATATCGTGCGCGGC
CTCGTCGCCATCGTGCTGGCGCTTTATTCGGGCCGACGCGCTTCCGAAATTCTGGCGACCGAGCCGGAAGAAGTGCTGAA
AAAGCTTGGGCTCGACGAGCATCTCACGCCACAACGCTCCAATGGCCTGCGCGCCATGGTGGCGCGCATCCACCGCGAAG
CCGAGCTGGCGAAAGAATCAACCTAG

Upstream 100 bases:

>100_bases
TCCATCACGCCAAACCGCTGACAGTTTTCCGTGACCTTGCGGGCTTTCGCCACTATATATGCGGCAGAAGTTCTGCAATG
ACCTATTTCAGGCGAGTATC

Downstream 100 bases:

>100_bases
AGCACGGCGACTTTAAGTCAGGCCGTCTCTAGGCCTTTGTTTAAGCATGGTCTTTTTCCGAAAACCGCTCACACTTTTCG
GGATCATGCTCTAATAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTTTIDSIMSDFEFLDDWEDRYRYVIDLGKELPPYPDDARDAAHKVQGCVSQVWLKTLPQDGNDPVIEFLGDSDAHIVRG
LVAIVLALYSGRRASEILATEPEEVLKKLGLDEHLTPQRSNGLRAMVARIHREAELAKEST

Sequences:

>Translated_141_residues
MTTTIDSIMSDFEFLDDWEDRYRYVIDLGKELPPYPDDARDAAHKVQGCVSQVWLKTLPQDGNDPVIEFLGDSDAHIVRG
LVAIVLALYSGRRASEILATEPEEVLKKLGLDEHLTPQRSNGLRAMVARIHREAELAKEST
>Mature_140_residues
TTTIDSIMSDFEFLDDWEDRYRYVIDLGKELPPYPDDARDAAHKVQGCVSQVWLKTLPQDGNDPVIEFLGDSDAHIVRGL
VAIVLALYSGRRASEILATEPEEVLKKLGLDEHLTPQRSNGLRAMVARIHREAELAKEST

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=126, Percent_Identity=39.6825396825397, Blast_Score=102, Evalue=9e-24,
Organism=Escherichia coli, GI1787969, Length=121, Percent_Identity=39.6694214876033, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15863; Mature: 15732

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTIDSIMSDFEFLDDWEDRYRYVIDLGKELPPYPDDARDAAHKVQGCVSQVWLKTLPQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
DGNDPVIEFLGDSDAHIVRGLVAIVLALYSGRRASEILATEPEEVLKKLGLDEHLTPQRS
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCCCCC
NGLRAMVARIHREAELAKEST
CCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTTIDSIMSDFEFLDDWEDRYRYVIDLGKELPPYPDDARDAAHKVQGCVSQVWLKTLPQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
DGNDPVIEFLGDSDAHIVRGLVAIVLALYSGRRASEILATEPEEVLKKLGLDEHLTPQRS
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCCCCC
NGLRAMVARIHREAELAKEST
CCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7756693; 11481430 [H]