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The map label for this gene is yeaT [C]

Identifier: 225851896

GI number: 225851896

Start: 383867

End: 384769

Strand: Reverse

Name: yeaT [C]

Synonym: BMEA_A0389

Alternate gene names: 225851896

Gene position: 384769-383867 (Counterclockwise)

Preceding gene: 225851900

Following gene: 225851891

Centisome position: 18.1

GC content: 58.14

Gene sequence:

>903_bases
GTGTCATATCTTGATAATCTGCGCGTTGTCGAATTGGGAAATCTCTCGGCGGCAGGCCGCGACCAACGCGCCTCGCCTGC
GGTAGCAAGCAATCGAATCAAGGAGTTGGAGAAGCATCTGGGGGTGCGGCTCTTCAACCGGACCACGCGCAAGCTGACGC
CGACGGAGCATGGCCGCGTATTTTATGATGGCGCATTGAAAATCCTTGAAGCCGTTGATGAGGCAGAAGCCGCAGTGGCG
GAACTGGCCAAAAACCCGAAGGGGTCGATTCGCATCACGGCTCCGCTCGGCTTCGGCCGGAGGCTCATCGCGTCGGGTAT
TCCCGAATTTCACGACAGGTATCCCGACATTGAAGTGCGGCTTCGCCTCTCCGATCACGAGGTCGATATCATGAGCGAGG
GCGTGGATGTCGCCTTCAAGCTCGGCGTGCTGGAAAACTCGAACCTGCGCATGCGCGGCATCATGAATTGCGAGCGCGTG
GTGTGTGCCGCGCCGCAATATCTTGAAAGGCACGGCACGCCACAATCTCCCGAGGCGCTTTTGAGCGACAGGCATCATTG
CCTTTTGCTCCGCTTTCCCAGTTCCAAGGAATATTATTGGCTGTTGCAAACCCCCGAGGGCTTGCGCAAATTCGAGGTTA
CCGGGCCTTATGATTCCGATGATGGCGATGTGTTGACGCAATGGGCGCTCGGCGGGCGCGGCATCATCAACAAGCCGCTG
TTTGAAGTGAAGGAATATATCCGCGACGGGCGGCTGACGCCCATCCTCCAACACACGCCGCCTGCACCGATCCAGCTTGC
CGCAATCTATCCGCACAAGCGACTTCAGGATCCCAAAGTGCGCCTTATCATCGATTTCATGACAGAGCGTTGCCAGCGGC
TGATCCGCGAGGCGCTTGCCTGA

Upstream 100 bases:

>100_bases
TACTGGAAATGCTTTATATGTGCCAAAGCTTTGCGCTTCTGGGAACGTCACAACACGACCATCACTTTCAAAAAAATCTA
GACAATCATGGGGGAGATGG

Downstream 100 bases:

>100_bases
AAGCCCTCCGGAACCGCTCTAATCCTTTATTTTTACGCACATCTTTTCCGAAAACCGTTTCACACTTTTCGGGATGCGCT
CTAAACTAGAACCGCTGTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSYLDNLRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRVFYDGALKILEAVDEAEAAVA
ELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVRLRLSDHEVDIMSEGVDVAFKLGVLENSNLRMRGIMNCERV
VCAAPQYLERHGTPQSPEALLSDRHHCLLLRFPSSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGIINKPL
FEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQRLIREALA

Sequences:

>Translated_300_residues
MSYLDNLRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRVFYDGALKILEAVDEAEAAVA
ELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVRLRLSDHEVDIMSEGVDVAFKLGVLENSNLRMRGIMNCERV
VCAAPQYLERHGTPQSPEALLSDRHHCLLLRFPSSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGIINKPL
FEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQRLIREALA
>Mature_299_residues
SYLDNLRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRVFYDGALKILEAVDEAEAAVAE
LAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVRLRLSDHEVDIMSEGVDVAFKLGVLENSNLRMRGIMNCERVV
CAAPQYLERHGTPQSPEALLSDRHHCLLLRFPSSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGIINKPLF
EVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQRLIREALA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=32.4232081911263, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=29.2682926829268, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=30.6620209059233, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=30.0353356890459, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=30.8771929824561, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI145693193, Length=284, Percent_Identity=29.2253521126761, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787589, Length=271, Percent_Identity=26.1992619926199, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790011, Length=296, Percent_Identity=24.6621621621622, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=161, Percent_Identity=29.1925465838509, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788706, Length=178, Percent_Identity=24.7191011235955, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI157672245, Length=126, Percent_Identity=30.1587301587302, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33922; Mature: 33790

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLDNLRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV
CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCHHCCCCCCCCCEE
FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVR
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCHHHHCCCCEEEE
LRLSDHEVDIMSEGVDVAFKLGVLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEAL
EEECCCCEEHHHCCCCEEEEEEEEECCCEEEEECCCHHHHHHCCHHHHHHCCCCCCCHHH
LSDRHHCLLLRFPSSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGIINKPL
HCCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEHHHCCCCCCCCCCH
FEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQRLIREALA
HHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SYLDNLRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV
CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCHHCCCCCCCCCEE
FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVR
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCHHHHCCCCEEEE
LRLSDHEVDIMSEGVDVAFKLGVLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEAL
EEECCCCEEHHHCCCCEEEEEEEEECCCEEEEECCCHHHHHHCCHHHHHHCCCCCCCHHH
LSDRHHCLLLRFPSSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGIINKPL
HCCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEHHHCCCCCCCCCCH
FEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQRLIREALA
HHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]