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The map label for this gene is yvoA [H]

Identifier: 225686308

GI number: 225686308

Start: 473849

End: 474622

Strand: Reverse

Name: yvoA [H]

Synonym: BMEA_B0487

Alternate gene names: 225686308

Gene position: 474622-473849 (Counterclockwise)

Preceding gene: 225686309

Following gene: 225686295

Centisome position: 40.03

GC content: 60.72

Gene sequence:

>774_bases
ATGAGCGGAAATTTCGGCGCTTTCCTGCCCAAGAACCTGCAGGGCTCTGCGCCCTCCTCCGGGGCGGGGCCGCTTTACGT
GCAACTGCGTCAGTCGCTCGAAGCGGCAATCCGTGCCGGGCAACTGGCCGATGGTGAGGCATTGCCGCCGGAACGCGACA
TTGCCGAATATACCAATATCAGCCGCGTGACCGTGCGCAAGGCCGTGGACGACCTCGTAAAGGCGGGGCTTCTGGTGCGC
CGTCACGGCTCAGGCACGTTTGTCGTACGCCCCGGCGAGCGTGTGCAGCAATCACTCTCCATGCTGACCTCATTTACGGA
AGATATGGCCCGGCGCGGCATTGCCACGCAATCGCGCTGGCTGGAGCGCGGGCTTTATTATCCCTCGCCGGAAGAAATGA
TGAAGCTTGGTTTGTCATCGGAAACGCGGGTGGCGCGGTTGGGGCGCCTGCGCATGGTGGGCGACATGCCGCTTGCCATC
GAAAGGGCAAGCCTTTCCAGTGAATTCCTGCCCGATCCCGATGCCGTGCAAGGCTCACTTTATGCGGAGCTGGGCCGCAC
AGGTTTTCGTCCGGTGCGTGCGGTACAGCGTATTGCGGCCTGCAATATCAAGACGTCGGATGCTCGCATTCTTGGCGTGC
AGGAAGGCGATGCGGGCCTTTCTATCGAGCGTCTTTCCTATCTGGCTTCGGGCCGCGTGGTGGAATTTACCAAGTCGCTC
TATCGCGGCGATGCCTATGATTTCGTTGCAGAGCTGACAATTCCGCAATCCTGA

Upstream 100 bases:

>100_bases
ATCAGCAGAAACTTCTGGTGGAACCGGCCGCAGACGCCCTGACGGGCGCGCTGCAACTGGCGCTCAATCGCTATGGTCCG
AAGAATGGAAGGGCATGCGG

Downstream 100 bases:

>100_bases
TTGAGCTACCATATAAAGTAAAACGGCCCGTTTCCGGGCCGTTTTGCATTTCAGTGGTGCTTGTTGCCTTCAAGGGCCAG
TTCCGCCGTGGGGTCGGCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSGNFGAFLPKNLQGSAPSSGAGPLYVQLRQSLEAAIRAGQLADGEALPPERDIAEYTNISRVTVRKAVDDLVKAGLLVR
RHGSGTFVVRPGERVQQSLSMLTSFTEDMARRGIATQSRWLERGLYYPSPEEMMKLGLSSETRVARLGRLRMVGDMPLAI
ERASLSSEFLPDPDAVQGSLYAELGRTGFRPVRAVQRIAACNIKTSDARILGVQEGDAGLSIERLSYLASGRVVEFTKSL
YRGDAYDFVAELTIPQS

Sequences:

>Translated_257_residues
MSGNFGAFLPKNLQGSAPSSGAGPLYVQLRQSLEAAIRAGQLADGEALPPERDIAEYTNISRVTVRKAVDDLVKAGLLVR
RHGSGTFVVRPGERVQQSLSMLTSFTEDMARRGIATQSRWLERGLYYPSPEEMMKLGLSSETRVARLGRLRMVGDMPLAI
ERASLSSEFLPDPDAVQGSLYAELGRTGFRPVRAVQRIAACNIKTSDARILGVQEGDAGLSIERLSYLASGRVVEFTKSL
YRGDAYDFVAELTIPQS
>Mature_256_residues
SGNFGAFLPKNLQGSAPSSGAGPLYVQLRQSLEAAIRAGQLADGEALPPERDIAEYTNISRVTVRKAVDDLVKAGLLVRR
HGSGTFVVRPGERVQQSLSMLTSFTEDMARRGIATQSRWLERGLYYPSPEEMMKLGLSSETRVARLGRLRMVGDMPLAIE
RASLSSEFLPDPDAVQGSLYAELGRTGFRPVRAVQRIAACNIKTSDARILGVQEGDAGLSIERLSYLASGRVVEFTKSLY
RGDAYDFVAELTIPQS

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=232, Percent_Identity=29.3103448275862, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1786950, Length=234, Percent_Identity=29.0598290598291, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082252, Length=224, Percent_Identity=27.6785714285714, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790118, Length=140, Percent_Identity=32.1428571428571, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27997; Mature: 27866

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNFGAFLPKNLQGSAPSSGAGPLYVQLRQSLEAAIRAGQLADGEALPPERDIAEYTNI
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
SRVTVRKAVDDLVKAGLLVRRHGSGTFVVRPGERVQQSLSMLTSFTEDMARRGIATQSRW
HHHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LERGLYYPSPEEMMKLGLSSETRVARLGRLRMVGDMPLAIERASLSSEFLPDPDAVQGSL
HHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHEECCCCCEEEHHHCCCCCCCCCCHHHHHH
YAELGRTGFRPVRAVQRIAACNIKTSDARILGVQEGDAGLSIERLSYLASGRVVEFTKSL
HHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHH
YRGDAYDFVAELTIPQS
HCCCHHHHHEEECCCCC
>Mature Secondary Structure 
SGNFGAFLPKNLQGSAPSSGAGPLYVQLRQSLEAAIRAGQLADGEALPPERDIAEYTNI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
SRVTVRKAVDDLVKAGLLVRRHGSGTFVVRPGERVQQSLSMLTSFTEDMARRGIATQSRW
HHHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LERGLYYPSPEEMMKLGLSSETRVARLGRLRMVGDMPLAIERASLSSEFLPDPDAVQGSL
HHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHEECCCCCEEEHHHCCCCCCCCCCHHHHHH
YAELGRTGFRPVRAVQRIAACNIKTSDARILGVQEGDAGLSIERLSYLASGRVVEFTKSL
HHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHH
YRGDAYDFVAELTIPQS
HCCCHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]