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The map label for this gene is yddA [H]

Identifier: 225686120

GI number: 225686120

Start: 253005

End: 254912

Strand: Reverse

Name: yddA [H]

Synonym: BMEA_B0273

Alternate gene names: 225686120

Gene position: 254912-253005 (Counterclockwise)

Preceding gene: 225686121

Following gene: 225686119

Centisome position: 21.5

GC content: 57.91

Gene sequence:

>1908_bases
TTGAACAATGAGCGGCAGATATCCCAACAGGCCTTGCAGGCAAGGGAGAGGTCTGCCGTGTCCCGGATGACGTCGTTCTG
GGGCCTGTTGCGCGCCTATTGGGTGTCGGATCGCTGGAAGGAAGCCTGGGCGCTGACCGCTGCGATTTTCCTTATCACCG
CTTTCATCAGCAAGACGACTGTTTGGGTGGCGGAAGCTTCCGGCCATCTGATGAATTCCATTGTGAATGTGAACACCGCT
CCGGTACAAAGCCCGCTTGCAGCGGTTGTCACCAATGCGGGCGTTCTGATCATATTGATACTGGCAAAAGATGTGCTGCT
CGTTGGCTTCCGGCATCTGCTGTCCACGACATTGCATCGCAAATGGCGCAAATGGCTGAACGACAGTTTTTCCGACGCGC
TTCTCGACCGCAATCACACCCATTTCCATCTGCAACAGGGCAATGGCGCGCATCTGCCGGATAATGTGGACCAGCGCGTG
CAGGAATCCATCAAGGGCATGACAGGCGGCGCAATCGGGCTGGTGATGGGCATTGTCGGCGTCGTTCTTTCCGCCTTCTT
CGTCGGGCAGAAACTGCTGGAAATCTCCACCGAAGTGCACGGCCTTGAATTCCTTGGCTCCTATGGCGGTGCGCTGCTCG
CTTTGGCGGTCATTCTTCTCTATGTGCCGCTCGGCACGCTGATCGCGATCAAGATCGGCAAACGGCTGGAACGTCTCAAT
CTCGGCATGCAAAAGGCGGAAGGCTCCTATCGTGGCGAATGGACCACGCTTTTGCGCCGCAGTTTCCAGATTTCCGCTTC
CGAAGGCGAGAATGTGCAACGCACGGTCAACAACCGGCTCTACCGGGAAGTGGACGGGACGTGGGACAAGCTCAACCGTT
TCGATGCTGCCTATCTCGCCTTCTCGCAGGCCTATGGCTTCCTTTCCCTCCGCATCGTGGCCTATATTCCGGGCTTCCTG
CCCTATATGAGCGGCGCGGTGAACTTCCGCAATTACGTGACCGGCGCAGAGCTTGTAGCGGCCATGATCAATGATTGCTC
CTGGTTCATTCAGGTCATGCCGGCAATCGCCAATCTGCGCGCCAATGCGGGCCGCGTGATCGGCCTCGCCCAATCTATCG
AAAGCGTGCAGGAACCTGCGGAATTCTATGCGCGCAGCGGCGTCAACCGCTTTGCCTTCACCCACCAGCATCCGCGCTTC
GGCCTTTCGGTGCGCAACCTCACACTCATGCAGGGCCCGGCAAGCGAAACGCCGTTCCTGCGTTCAGGCGTCATCAATAT
GCGCGCTGGCGACTGGATTTATATGCGTGGCGAATCCGGCTCCGGCAAAACCTCCTTCATCAAGGCGCTGAATGGTCTGT
GGCCTTATGGCACCGGCAACATCATCTATCCGCAGGGCGCAAACTCGCTCTATGTGCCACAGGAGGCGAAATTTCCTTCC
GTTTCGCTGAAACAGCTCGTCGCGCTGCCGAGAGACGAAGGCGACTTCAACGACCTGGCCGTCGCAGCCGTGCTGCATGA
GGCAGGGCTTGGCGAATTTATCGAACGCATGGAGGATGCCGATGCGGGCAATTCGCCATGGGATATGGTGCTTTCGGGCG
GACAGAAGCAGAAAGTCATGCTTGCACGCATCCTGCTACACAAACCGTCTATCATCTTCCTGGACGAGGCAACCGGCGCG
CTCGATCCCGCTTCCAAACTGCGTTTCCATACGGCACTTAAAACCCGCTGCCCGGACGCCATCGTCGTCAGCATCATGCA
TGAGGAAAAGCTGCCCACGCTCGAAAGCGGCGAAAGCATCTTCTCTCATGTGCTGGATATCGCCAATGGCTATGTTTCGC
TCATCCCCGCCCATTTCGCGGCCGCCCCGGATGCGGAACCCGCAGTGTCGCTTATCGCAGCCGAATAA

Upstream 100 bases:

>100_bases
TTACTCCCGTTTTGTATTGACTATTAACATTACGTTAACCACAGTTTGTTGCAATATGTTACAAAGCGTTATCAAGGCGC
ATTGCGCAACGATGTGTTGA

Downstream 100 bases:

>100_bases
GCCTTCTTTCACAACCGACATTTCATGTCAGGATATCCACGGTTGCAAAAGTCTAAAATTGGACTATATTCCAATTTAGA
CAAGATGGAGGCGATCATGG

Product: microcin-J25 export ATP-binding/permease mcjD

Products: NA

Alternate protein names: CDS102 [H]

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MNNERQISQQALQARERSAVSRMTSFWGLLRAYWVSDRWKEAWALTAAIFLITAFISKTTVWVAEASGHLMNSIVNVNTA
PVQSPLAAVVTNAGVLIILILAKDVLLVGFRHLLSTTLHRKWRKWLNDSFSDALLDRNHTHFHLQQGNGAHLPDNVDQRV
QESIKGMTGGAIGLVMGIVGVVLSAFFVGQKLLEISTEVHGLEFLGSYGGALLALAVILLYVPLGTLIAIKIGKRLERLN
LGMQKAEGSYRGEWTTLLRRSFQISASEGENVQRTVNNRLYREVDGTWDKLNRFDAAYLAFSQAYGFLSLRIVAYIPGFL
PYMSGAVNFRNYVTGAELVAAMINDCSWFIQVMPAIANLRANAGRVIGLAQSIESVQEPAEFYARSGVNRFAFTHQHPRF
GLSVRNLTLMQGPASETPFLRSGVINMRAGDWIYMRGESGSGKTSFIKALNGLWPYGTGNIIYPQGANSLYVPQEAKFPS
VSLKQLVALPRDEGDFNDLAVAAVLHEAGLGEFIERMEDADAGNSPWDMVLSGGQKQKVMLARILLHKPSIIFLDEATGA
LDPASKLRFHTALKTRCPDAIVVSIMHEEKLPTLESGESIFSHVLDIANGYVSLIPAHFAAAPDAEPAVSLIAAE

Sequences:

>Translated_635_residues
MNNERQISQQALQARERSAVSRMTSFWGLLRAYWVSDRWKEAWALTAAIFLITAFISKTTVWVAEASGHLMNSIVNVNTA
PVQSPLAAVVTNAGVLIILILAKDVLLVGFRHLLSTTLHRKWRKWLNDSFSDALLDRNHTHFHLQQGNGAHLPDNVDQRV
QESIKGMTGGAIGLVMGIVGVVLSAFFVGQKLLEISTEVHGLEFLGSYGGALLALAVILLYVPLGTLIAIKIGKRLERLN
LGMQKAEGSYRGEWTTLLRRSFQISASEGENVQRTVNNRLYREVDGTWDKLNRFDAAYLAFSQAYGFLSLRIVAYIPGFL
PYMSGAVNFRNYVTGAELVAAMINDCSWFIQVMPAIANLRANAGRVIGLAQSIESVQEPAEFYARSGVNRFAFTHQHPRF
GLSVRNLTLMQGPASETPFLRSGVINMRAGDWIYMRGESGSGKTSFIKALNGLWPYGTGNIIYPQGANSLYVPQEAKFPS
VSLKQLVALPRDEGDFNDLAVAAVLHEAGLGEFIERMEDADAGNSPWDMVLSGGQKQKVMLARILLHKPSIIFLDEATGA
LDPASKLRFHTALKTRCPDAIVVSIMHEEKLPTLESGESIFSHVLDIANGYVSLIPAHFAAAPDAEPAVSLIAAE
>Mature_635_residues
MNNERQISQQALQARERSAVSRMTSFWGLLRAYWVSDRWKEAWALTAAIFLITAFISKTTVWVAEASGHLMNSIVNVNTA
PVQSPLAAVVTNAGVLIILILAKDVLLVGFRHLLSTTLHRKWRKWLNDSFSDALLDRNHTHFHLQQGNGAHLPDNVDQRV
QESIKGMTGGAIGLVMGIVGVVLSAFFVGQKLLEISTEVHGLEFLGSYGGALLALAVILLYVPLGTLIAIKIGKRLERLN
LGMQKAEGSYRGEWTTLLRRSFQISASEGENVQRTVNNRLYREVDGTWDKLNRFDAAYLAFSQAYGFLSLRIVAYIPGFL
PYMSGAVNFRNYVTGAELVAAMINDCSWFIQVMPAIANLRANAGRVIGLAQSIESVQEPAEFYARSGVNRFAFTHQHPRF
GLSVRNLTLMQGPASETPFLRSGVINMRAGDWIYMRGESGSGKTSFIKALNGLWPYGTGNIIYPQGANSLYVPQEAKFPS
VSLKQLVALPRDEGDFNDLAVAAVLHEAGLGEFIERMEDADAGNSPWDMVLSGGQKQKVMLARILLHKPSIIFLDEATGA
LDPASKLRFHTALKTRCPDAIVVSIMHEEKLPTLESGESIFSHVLDIANGYVSLIPAHFAAAPDAEPAVSLIAAE

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4506341, Length=387, Percent_Identity=22.7390180878553, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI9945308, Length=166, Percent_Identity=31.3253012048193, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI4826958, Length=163, Percent_Identity=30.6748466257669, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI7262393, Length=142, Percent_Identity=30.9859154929577, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI9955966, Length=412, Percent_Identity=25.2427184466019, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI45243524, Length=412, Percent_Identity=25.2427184466019, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI9955968, Length=253, Percent_Identity=26.8774703557312, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI1787772, Length=571, Percent_Identity=25.0437828371278, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI1787143, Length=403, Percent_Identity=22.3325062034739, Blast_Score=66, Evalue=9e-12,
Organism=Escherichia coli, GI1787112, Length=231, Percent_Identity=25.5411255411255, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI72000520, Length=501, Percent_Identity=23.5528942115768, Blast_Score=92, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17564250, Length=514, Percent_Identity=23.3463035019455, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI72000518, Length=163, Percent_Identity=28.2208588957055, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17532409, Length=442, Percent_Identity=22.8506787330317, Blast_Score=79, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71984940, Length=361, Percent_Identity=25.4847645429363, Blast_Score=78, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17542146, Length=275, Percent_Identity=25.8181818181818, Blast_Score=77, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=236, Percent_Identity=26.271186440678, Blast_Score=73, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=231, Percent_Identity=27.7056277056277, Blast_Score=72, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17532411, Length=138, Percent_Identity=31.1594202898551, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=219, Percent_Identity=26.027397260274, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=197, Percent_Identity=26.3959390862944, Blast_Score=70, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=190, Percent_Identity=28.4210526315789, Blast_Score=69, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=229, Percent_Identity=25.764192139738, Blast_Score=68, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325110, Length=155, Percent_Identity=30.3225806451613, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24643394, Length=568, Percent_Identity=21.3028169014084, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21357907, Length=225, Percent_Identity=29.3333333333333, Blast_Score=72, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24659289, Length=266, Percent_Identity=24.0601503759398, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI23397593, Length=198, Percent_Identity=29.2929292929293, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 69709; Mature: 69709

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNERQISQQALQARERSAVSRMTSFWGLLRAYWVSDRWKEAWALTAAIFLITAFISKTT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
VWVAEASGHLMNSIVNVNTAPVQSPLAAVVTNAGVLIILILAKDVLLVGFRHLLSTTLHR
EEEECCCCHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KWRKWLNDSFSDALLDRNHTHFHLQQGNGAHLPDNVDQRVQESIKGMTGGAIGLVMGIVG
HHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
VVLSAFFVGQKLLEISTEVHGLEFLGSYGGALLALAVILLYVPLGTLIAIKIGKRLERLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGMQKAEGSYRGEWTTLLRRSFQISASEGENVQRTVNNRLYREVDGTWDKLNRFDAAYLA
CCHHHCCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FSQAYGFLSLRIVAYIPGFLPYMSGAVNFRNYVTGAELVAAMINDCSWFIQVMPAIANLR
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ANAGRVIGLAQSIESVQEPAEFYARSGVNRFAFTHQHPRFGLSVRNLTLMQGPASETPFL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEECCCCCCCCEECCEEEECCCCCCCCHH
RSGVINMRAGDWIYMRGESGSGKTSFIKALNGLWPYGTGNIIYPQGANSLYVPQEAKFPS
HHCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEECCCCCCCCC
VSLKQLVALPRDEGDFNDLAVAAVLHEAGLGEFIERMEDADAGNSPWDMVLSGGQKQKVM
CCHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHH
LARILLHKPSIIFLDEATGALDPASKLRFHTALKTRCPDAIVVSIMHEEKLPTLESGESI
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHH
FSHVLDIANGYVSLIPAHFAAAPDAEPAVSLIAAE
HHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHEECC
>Mature Secondary Structure
MNNERQISQQALQARERSAVSRMTSFWGLLRAYWVSDRWKEAWALTAAIFLITAFISKTT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
VWVAEASGHLMNSIVNVNTAPVQSPLAAVVTNAGVLIILILAKDVLLVGFRHLLSTTLHR
EEEECCCCHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KWRKWLNDSFSDALLDRNHTHFHLQQGNGAHLPDNVDQRVQESIKGMTGGAIGLVMGIVG
HHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
VVLSAFFVGQKLLEISTEVHGLEFLGSYGGALLALAVILLYVPLGTLIAIKIGKRLERLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGMQKAEGSYRGEWTTLLRRSFQISASEGENVQRTVNNRLYREVDGTWDKLNRFDAAYLA
CCHHHCCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FSQAYGFLSLRIVAYIPGFLPYMSGAVNFRNYVTGAELVAAMINDCSWFIQVMPAIANLR
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ANAGRVIGLAQSIESVQEPAEFYARSGVNRFAFTHQHPRFGLSVRNLTLMQGPASETPFL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEECCCCCCCCEECCEEEECCCCCCCCHH
RSGVINMRAGDWIYMRGESGSGKTSFIKALNGLWPYGTGNIIYPQGANSLYVPQEAKFPS
HHCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEECCCCCCCCC
VSLKQLVALPRDEGDFNDLAVAAVLHEAGLGEFIERMEDADAGNSPWDMVLSGGQKQKVM
CCHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHH
LARILLHKPSIIFLDEATGALDPASKLRFHTALKTRCPDAIVVSIMHEEKLPTLESGESI
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHH
FSHVLDIANGYVSLIPAHFAAAPDAEPAVSLIAAE
HHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]