Click here to switch to the map view.

The map label for this gene is ybiS [H]

Identifier: 225686039

GI number: 225686039

Start: 168547

End: 169281

Strand: Reverse

Name: ybiS [H]

Synonym: BMEA_B0184

Alternate gene names: 225686039

Gene position: 169281-168547 (Counterclockwise)

Preceding gene: 225686045

Following gene: 225686038

Centisome position: 14.28

GC content: 60.54

Gene sequence:

>735_bases
ATGAAACCACGTCATCTTCTTTTGATCGGATCACTGACGGCAATCGCCGTCTCCATCGTCAGCACCGGCATGGCCTTTGC
CGATGACCGTTATTCCGATCTGCCGCCTGTGCGCGTGAGCCAGGCGATTTCCGCACCATGGGTCGCGCAGTTGCAGGACG
CACAGGCCCGGCCACGCATCGCACGGCAGGAAACAAGAAAAACCAAAACGCACTATAACAAGGTTTCTTACCAGCGCCCG
GCGACAAACCCGGCAACCACGGCACGCAAGAAGCAGTTTGACCCGATCTATCTGCCGCAGATCGTTTCCTACTCGGGCAA
GGAAAAGCCCGGCACCATCGTCATCGATACGGCCAGCCGTTTTCTCTATCTGGTACAGGCCGACGGCAAGGCACGCCGCT
ACGGTGTCGGCGTCGGCAAGCAGGGGTTCAGCTGGAAAGGCACACAGCGCATCAGCCGCAAGGCCGAATGGCCCACATGG
ACGCCGCCCAGTGAAATGATTGCCCGCGAGCGCAAGAAGGGCCGTTTCCTGCCCGCACGCATGGATGGCGGGATCAACAA
TCCGCTCGGCGCCCGCGCGCTTTATCTGGGTTCAACCCTCTACCGCATCCATGGCGCCAACCAGCCGTGGACCATTGGCA
AGGCCATGTCCTCGGGCTGCATTCGTATGCGTAACGAGGATGTGACCGACCTTTACGAACGCACACCGGTGGGAACCCGC
GTGGTGGTCCGCTGA

Upstream 100 bases:

>100_bases
CATGAACTTCGGGGGCGCTCTCCTGACAGCAGATGTCAGGAGATGCGACGGGCAACCGCGCCAGCCTGGTGAGCGGCGCA
AAGATAGACGGATCAAAACC

Downstream 100 bases:

>100_bases
GGGATTCACAAGCGCAAACAGCGGTTTTTATGGGGGTCGCCTTACGGGAAGGCGACCCAGTTATTTTTCACAAGTTTGAA
ATATCCGAATTTCCTGCAAG

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAQARPRIARQETRKTKTHYNKVSYQRP
ATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTW
TPPSEMIARERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGANQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTR
VVVR

Sequences:

>Translated_244_residues
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAQARPRIARQETRKTKTHYNKVSYQRP
ATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTW
TPPSEMIARERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGANQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTR
VVVR
>Mature_244_residues
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAQARPRIARQETRKTKTHYNKVSYQRP
ATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTW
TPPSEMIARERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGANQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTR
VVVR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=134, Percent_Identity=42.5373134328358, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788299, Length=136, Percent_Identity=39.7058823529412, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787356, Length=135, Percent_Identity=34.8148148148148, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787968, Length=167, Percent_Identity=33.5329341317365, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27287; Mature: 27287

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAQARPRI
CCCCEEEEEEHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCHH
ARQETRKTKTHYNKVSYQRPATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEEECCCE
FLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTWTPPSEMIARERKKGRFLPAR
EEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHH
MDGGINNPLGARALYLGSTLYRIHGANQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTR
CCCCCCCCCCHHHHHHCCEEEEEECCCCCEEHHHHHHCCEEEECCCCHHHHHHHCCCCEE
VVVR
EEEC
>Mature Secondary Structure
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAQARPRI
CCCCEEEEEEHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCHH
ARQETRKTKTHYNKVSYQRPATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEEECCCE
FLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTWTPPSEMIARERKKGRFLPAR
EEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHH
MDGGINNPLGARALYLGSTLYRIHGANQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTR
CCCCCCCCCCHHHHHHCCEEEEEECCCCCEEHHHHHHCCEEEECCCCHHHHHHHCCCCEE
VVVR
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]