Click here to switch to the map view.

The map label for this gene is fliN [H]

Identifier: 225685984

GI number: 225685984

Start: 121822

End: 122142

Strand: Reverse

Name: fliN [H]

Synonym: BMEA_B0126

Alternate gene names: 225685984

Gene position: 122142-121822 (Counterclockwise)

Preceding gene: 225685985

Following gene: 225685983

Centisome position: 10.3

GC content: 58.26

Gene sequence:

>321_bases
ATGCAGCAGGAACTGAACGAAGCCATTGAGGAACTGCGCGAGGAAAAGCCACGCAGCGCGCAAAAAAGTGCTTCCAAGCC
CAATCTTGATCTCATCATGGGCATTCCGGTGGATGTGCAGGTGGTTCTCGGCGGCACGACCATGCCGGTTTCCAGCCTGA
TGAAGCTGGGACGCGGTGCCGTCATCACGCTCGACAAGCAGATCGGCGATCCGGTCGATATCGTGGTCAACGGGCGGGTG
ATCGCGCGCGGTGAAGTGATCGTTCTGGAAGACGATTCCTCGCGGTTCGGCGTCAGCCTCACCGAAATCATCGGCAAGTA
A

Upstream 100 bases:

>100_bases
CAGACAAGAACGCGCTGCCCGTTTTCGTGCGCCGCGCGGTCAAGAAGGCAACCGTTGAACTGGCGGGACAGGCATGAGCG
CGGAAACCAAGGATAGGAAC

Downstream 100 bases:

>100_bases
CAGGCGCATTCCGCACATGAGCGACACCGAGCAGCACATCCTCGCCGAAACCGGCGCCGCCGGGCCGGGCAACAGTATTG
TCGACACCCTGACCGGCCCG

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRV
IARGEVIVLEDDSSRFGVSLTEIIGK

Sequences:

>Translated_106_residues
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRV
IARGEVIVLEDDSSRFGVSLTEIIGK
>Mature_106_residues
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRV
IARGEVIVLEDDSSRFGVSLTEIIGK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=115, Percent_Identity=37.3913043478261, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 11411; Mature: 11411

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGA
CCHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHCCCCE
VITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK
EEEEECCCCCCEEEEECCEEEECCCEEEEECCCCCCCEEHHHHHCC
>Mature Secondary Structure
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGA
CCHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHCCCCE
VITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK
EEEEECCCCCCEEEEECCEEEECCCEEEEECCCCCCCEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9858749; 11481430 [H]