Definition | Wolbachia sp. wRi, complete genome. |
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Accession | NC_012416 |
Length | 1,445,873 |
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The map label for this gene is 225630447
Identifier: 225630447
GI number: 225630447
Start: 755998
End: 756978
Strand: Reverse
Name: 225630447
Synonym: WRi_006910
Alternate gene names: NA
Gene position: 756978-755998 (Counterclockwise)
Preceding gene: 225630448
Following gene: 225630445
Centisome position: 52.35
GC content: 35.68
Gene sequence:
>981_bases ATGACACCAGACTTTAGTATTTCAGTAGAGGGCATTTCCATCACTGAATTGGTGAAAAGTCGATTGGTATCAATGCATAT TACTGATGAAGCAGGAGTAATAAGTGATACTGCTGTAATTCATCTTGATGACCGTGATTCATTATTTGAGATTCCTAGAA CTGGGGCAAAGCTAAATATTTTACTCGGGTATAAGGAAACTGGCATTGTGCCAATGGGAGATTATATAGTAAATGAAATT ACGCTACAAGGCCCGCCACAATCACTAAAGATTAAAAGTCATGCAGCGGATCTAAAAGAGTCATTAAAGGAACAAGTGTT TAATGAGTGGCATCAAATCACCTTAAATGATTTGGTAAAAAAGATTGCAGACAAACATGGCTATCAAGCTAAAATTGCTG CAGAGTTTGTAAATATCATGATATCACATATTGATCAAACTGCAGAGAGCGATATGCATTTTTTAACCAGGCTTGCTCAA ATTTATGGAGCAATAGCAAAACCTGCAGGAGGATATTTACTGTTTGTTTCAAAAGGAAAAGCAAAATCAGTTACCGGAAA AACTTTAAGCACTGTTACTTTAACACCTAGAGATATTACAAATTGGAAAGTAAAATTTAATGAGCGTAATCAATATGGCT CGGTTATTGCTTACTGGTATGATTATGAAAAAGCAGAGACAATAACGGAAAAAGTAGGTGATCAAGAACCAAGCTATATT TTGCGAGATATTTATGCAAGTAGTGATTTGGCACAAAGTGCAGCATCTGCGAAGTTGAATCAGCTGATGAGTAATGCAGC AACACTCAATGTCACAATGCCAGGAAATCCTGAATTATTTGCTGAAGCAAAGATTAATCTTTCTGGATTTCGCAAAGGAG TTTATGGTAAATGGATAATAAATAGGGCTGAGCATGTAATTGATAACCTTGGCTATCGTACTATTGTTACGGGAATAATT GATAGTTGGAAAGTAAATTGA
Upstream 100 bases:
>100_bases GGGCTTGCAGAGTACGAACTTCTTCCTGCAGGATTAATCATTAAACTTCCTGTTATTCAAAAAGAGACGCAAAAGCAAGT AGTAAAACTATGGGATTAAA
Downstream 100 bases:
>100_bases TAATTTCCTCATAGATATCTTCTTTATTATTGTTTAATTCCTCTACAGCAAGATCTAAAGGAGTTTTTTTATCTTTGTTT TTAGCAGAAGGATTTGCTCC
Product: tail protein D, putative
Products: NA
Alternate protein names: Phage Late Control D Family Protein; Phage Late Control D; Phage Late Control Gene D Protein; Late Control Gene D Protein; Tail Protein D; Phage-Related Tail Protein; Bacteriophage Regulatory Protein; Phage Protein D; Phage Late Control D Protein; Regulator Of Late Gene Expression; Bacteriophage Protein; Phage Tail Protein; Pyocin R2_PP Tail Formation; Prophage Tail Protein; Prophage; Fels-2 Prophage Protein; Phage Protein D-Like; Phage Late Control; Phage Protein; Gene D Protein; Phage-Related Late Control Gene Protein; Phage Tail Protein D; Pyocin R2_PP Tail Formation GPD; Cytoplasmic Protein; Phage Late Control Gene D Protein GpD; Gene Late Control D Protein; Bacteriophage P2 GpD Protein; Bacteriophage Late Gene Regulator; Bacteriophage Late Control D Protein; Bacteriophage-Related Tail D Protein; Phage-Like Tail Protein; Bacteriophage P2 Tail Protein GPD; Phage-Like Protein; Late Control D Protein; Control Protein For Phage Late Genes Expression; Phage Regulator; Regulator Of Late Phage Gene Expression; Phage Late Control Gene D Protein-Like Protein; Phage Late Control Gene D Protein GPD; Late Control Gene D Protein Prophage; Bacteriophage Late Gene Control Protein D; Bacteriophage Tail Protein D; Late Gene Regulator
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MTPDFSISVEGISITELVKSRLVSMHITDEAGVISDTAVIHLDDRDSLFEIPRTGAKLNILLGYKETGIVPMGDYIVNEI TLQGPPQSLKIKSHAADLKESLKEQVFNEWHQITLNDLVKKIADKHGYQAKIAAEFVNIMISHIDQTAESDMHFLTRLAQ IYGAIAKPAGGYLLFVSKGKAKSVTGKTLSTVTLTPRDITNWKVKFNERNQYGSVIAYWYDYEKAETITEKVGDQEPSYI LRDIYASSDLAQSAASAKLNQLMSNAATLNVTMPGNPELFAEAKINLSGFRKGVYGKWIINRAEHVIDNLGYRTIVTGII DSWKVN
Sequences:
>Translated_326_residues MTPDFSISVEGISITELVKSRLVSMHITDEAGVISDTAVIHLDDRDSLFEIPRTGAKLNILLGYKETGIVPMGDYIVNEI TLQGPPQSLKIKSHAADLKESLKEQVFNEWHQITLNDLVKKIADKHGYQAKIAAEFVNIMISHIDQTAESDMHFLTRLAQ IYGAIAKPAGGYLLFVSKGKAKSVTGKTLSTVTLTPRDITNWKVKFNERNQYGSVIAYWYDYEKAETITEKVGDQEPSYI LRDIYASSDLAQSAASAKLNQLMSNAATLNVTMPGNPELFAEAKINLSGFRKGVYGKWIINRAEHVIDNLGYRTIVTGII DSWKVN >Mature_325_residues TPDFSISVEGISITELVKSRLVSMHITDEAGVISDTAVIHLDDRDSLFEIPRTGAKLNILLGYKETGIVPMGDYIVNEIT LQGPPQSLKIKSHAADLKESLKEQVFNEWHQITLNDLVKKIADKHGYQAKIAAEFVNIMISHIDQTAESDMHFLTRLAQI YGAIAKPAGGYLLFVSKGKAKSVTGKTLSTVTLTPRDITNWKVKFNERNQYGSVIAYWYDYEKAETITEKVGDQEPSYIL RDIYASSDLAQSAASAKLNQLMSNAATLNVTMPGNPELFAEAKINLSGFRKGVYGKWIINRAEHVIDNLGYRTIVTGIID SWKVN
Specific function: Unknown
COG id: COG3500
COG function: function code R; Phage protein D
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36213; Mature: 36082
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPDFSISVEGISITELVKSRLVSMHITDEAGVISDTAVIHLDDRDSLFEIPRTGAKLNI CCCCCEEEECCCCHHHHHHHHHEEEEECCCCCCEECEEEEEECCCCCHHHCCCCCCEEEE LLGYKETGIVPMGDYIVNEITLQGPPQSLKIKSHAADLKESLKEQVFNEWHQITLNDLVK EEEECCCCCEECCCHHEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHEEEHHHHHH KIADKHGYQAKIAAEFVNIMISHIDQTAESDMHFLTRLAQIYGAIAKPAGGYLLFVSKGK HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC AKSVTGKTLSTVTLTPRDITNWKVKFNERNQYGSVIAYWYDYEKAETITEKVGDQEPSYI CCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHCCCCHHHH LRDIYASSDLAQSAASAKLNQLMSNAATLNVTMPGNPELFAEAKINLSGFRKGVYGKWII HHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEHHHHHCCCCHHHHH NRAEHVIDNLGYRTIVTGIIDSWKVN HHHHHHHHHCCHHHHHHHHHHCCCCC >Mature Secondary Structure TPDFSISVEGISITELVKSRLVSMHITDEAGVISDTAVIHLDDRDSLFEIPRTGAKLNI CCCCEEEECCCCHHHHHHHHHEEEEECCCCCCEECEEEEEECCCCCHHHCCCCCCEEEE LLGYKETGIVPMGDYIVNEITLQGPPQSLKIKSHAADLKESLKEQVFNEWHQITLNDLVK EEEECCCCCEECCCHHEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHEEEHHHHHH KIADKHGYQAKIAAEFVNIMISHIDQTAESDMHFLTRLAQIYGAIAKPAGGYLLFVSKGK HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC AKSVTGKTLSTVTLTPRDITNWKVKFNERNQYGSVIAYWYDYEKAETITEKVGDQEPSYI CCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHCCCCHHHH LRDIYASSDLAQSAASAKLNQLMSNAATLNVTMPGNPELFAEAKINLSGFRKGVYGKWII HHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEHHHHHCCCCHHHHH NRAEHVIDNLGYRTIVTGIIDSWKVN HHHHHHHHHCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA