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The map label for this gene is yqgF [C]

Identifier: 222527368

GI number: 222527368

Start: 5151791

End: 5152252

Strand: Direct

Name: yqgF [C]

Synonym: Chy400_4158

Alternate gene names: 222527368

Gene position: 5151791-5152252 (Clockwise)

Preceding gene: 222527367

Following gene: 222527369

Centisome position: 97.78

GC content: 57.36

Gene sequence:

>462_bases
ATGAATGACCAGATTATTCTCGCGCTCGATGTCGGTGAGCGGCGGATCGGAGTAGCCATCAGTGATGCCGATGCCCGCAT
TGCCGCACCCTTAACGACCATCAATGCCCACCCTCCGGAACGCGCCATTGCCCAGATTGTGCGCCTGGTACAGGAACGTG
GGGTTAGCCGGGTGGTTGTCGGCCTGCCACTAACGATGCGTGGCGAGCGCGGCCCACAAGCTGAGGTGGTGCAACGCTTT
GCCGATACTTTGAGCAGCGCGCTTTCGTGCCCGGTTGAGATGTTCGACGAGCGACTAACCAGTGTCGCTGCCGAACAGAT
GTTACGCAACCTTGGCCTCAAACCGGCCAAAATCAAAGCCCAGATCGATCAGGTAGCCGCATCGATCATCTTACAAGACT
ACCTCGATGCCCGCCGGAGTAACCCAAACAGAAGCCATGAACTACCACATTCGTCCGATTAG

Upstream 100 bases:

>100_bases
GCGCTGCAAGAACTGGTTGCCGCCGGACGCCTGGCCGGATTTGAGTTACCCGACAATGTAGATCGCTTCCCAGGCTGGAG
CTGGCAGTTGCGGATTCGTC

Downstream 100 bases:

>100_bases
CGCTGCTGAAACCCGCCCGCTGCGTCAGCAGATTCTGCGTCCACACCAGACCATTGCCGAACTGGTCTATCCCGGCGACG
ATCATCCGCTTGCGCTCCAC

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MNDQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGLPLTMRGERGPQAEVVQRF
ADTLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQIDQVAASIILQDYLDARRSNPNRSHELPHSSD

Sequences:

>Translated_153_residues
MNDQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGLPLTMRGERGPQAEVVQRF
ADTLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQIDQVAASIILQDYLDARRSNPNRSHELPHSSD
>Mature_153_residues
MNDQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGLPLTMRGERGPQAEVVQRF
ADTLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQIDQVAASIILQDYLDARRSNPNRSHELPHSSD

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=33.587786259542, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CHLAA (A9WCR4)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001637415.1
- ProteinModelPortal:   A9WCR4
- SMR:   A9WCR4
- GeneID:   5825659
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_3849
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   CLSK974624
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16710; Mature: 16710

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVV
CCCCEEEEEECCCCEEEEEECCCCCCHHCCHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE
GLPLTMRGERGPQAEVVQRFADTLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKA
CCCEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QIDQVAASIILQDYLDARRSNPNRSHELPHSSD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNDQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVV
CCCCEEEEEECCCCEEEEEECCCCCCHHCCHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE
GLPLTMRGERGPQAEVVQRFADTLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKA
CCCEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QIDQVAASIILQDYLDARRSNPNRSHELPHSSD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA