| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is priA [H]
Identifier: 222527361
GI number: 222527361
Start: 5137147
End: 5139675
Strand: Reverse
Name: priA [H]
Synonym: Chy400_4150
Alternate gene names: 222527361
Gene position: 5139675-5137147 (Counterclockwise)
Preceding gene: 222527363
Following gene: 222527360
Centisome position: 97.55
GC content: 57.45
Gene sequence:
>2529_bases ATGAATCCTGTCTCTGAACTGGTGGCTGATGTGGCCGTCCTCACAGACTCCTTGCCATCCCAACACCAGGGCATCTTCTC GTACCGTGTACCTGATCATTTGCAAGCGGCCATCGCGATAGGACAACTGGTGTGGGTACCGTTGCGCCAACAGCAGGTTC AGGGGGTGGTTCTGGCAATGCAGCGCCGCACTGTCAGTGGGTTGCGCGATCTGATTGACCTGGTCGATCCTGATCTATCG ATCCCACAACTGACGATTCAATTAGCGCATTGGGTGGCCGAGAACTGCTATACAACGCTGGCAGCGGTGCTTGATCTCTG TTTGCCGCCAGGCATGATCCGGCAGGCGGTGACAACCTGGCGGGCAACGGCGGCAGGGCTTACGTGTGAATTGGGTGCAT TACCAGAGCGTGAGCGGGCGATCCTCTTTTATTTGCGTCGGCACGGGGAATTGAGTGAGGCCGACTTGCGGGCGGCGCTG CGCGGAAGTGATGCAAATCTGCGGGCTGCGTATCGGTCATTGGCTGAACGAGGTCTGATTACACGCCGCTTGCGTATCGA TCCACCGCGAGTACGTCCCCAACAAGAGCAGTTTGTCCGGTTAACGTTGCCCGATCTCGATCAAGCAATAGCCGAACTGC GCCGTGCACCCAGACAGGCAGCAGCATTGCGCTGGCTGGCTGAACGGACGACAAGCGATCCTCCTACGGTGAATGAATTA CGGCGGGCGACAGGTATTGACAGTACAGGGATACGTGCGCTTGAACGGCGGGGTTTTGTACAACTGGTTGGTCGTGAAAT CTATCGGGATCCACTGGCAACAGTACATCCGGCCACCGATACACCGCCACCATTGACAAGTGCTCAGCGGGTAGCGTATG AGACAATCGTGACTGCGCTTGAAGCCGGTACGGGCGGAAGGTTTCTGCTCTATGGGATCACCGGTAGCGGGAAAACTGAA GTCTACCTGCGACTGATCGCTCGTGCGTTACGGCTTGGCCGACAGGCATTGGTACTGGCGCCGGAGATTGCCCTCACGAC CCAGTTAGTCCGTCGCTTTGTGGCTCGTTTTGGTCATCAACTGGCGGTCCTGCATAGCGGGTTAAGTGATGGTGAGCGCT ACGATGAGTGGCGGCGATTGCGGCGGGGTGAAGCCAGGGTGGCTATCGGTGCACGTTCTGCTCTTTTCGCACCATTACCC GATCTTGGTCTGGTGATTGTCGATGAGGAGCACGAACCTGGCTACAAAAGCGATGCAGCACCTCGTTACCATGCGCGTGA TGCAGCATTACACCTTGCCGATCTGGCCGGAGTAACGGTCGTCCTTGGTAGTGCGACCCCAAGCGTTGAAACCTACTATG CCGCCCGCAATGGTCAGATTCAGTTGCTCGAATTACCAGAGCGAATTGGTGCCCAGATTGGCGTTGATGGTCTCGTTCAC AGTCGCCCCTTGCCGCTGCCGCCAGTGCGTATTGTTGATATGCGGCATGAGCTACAGCAGGGGAATACATCTATCTTCTC GATCAAACTGCAACACGCGCTGGCGCAGACCCTTGCCCGTGGGCAACAGGCGATCCTCTTTCTCAATCGCCGGGGAGCCG CTTCCTTTGTTTTTTGTCGGGATTGTGGTTACGTTGCCCGTTGTGAACGGTGTGCCGCGCCACTCACCGTTCATTACGAT ACGGCAACCACTGCTGAAGCCGGCGAGTCGGTGCGCGTTTTAATCTGCCATTCATGCGGTCAGCGCACGGCTACGCCGGT AGTCTGTCCACAATGTCTCAGTCACCGCATTCGCGCCTCGGGTATCGGCACACAGCGCGTTGCCGAGGTGGTACGTGAAT TGTTTCCCGATGCACGGGTAGCACGCTGGGATCGGGATAGTATCAGTGGAAAGAATGCCCATGATGCCCTGCTAGAAGCA ATGGTACGCCACGAGATCGATGTGCTGGTCGGTACGCAGATGATTGCGAAAGGGCTTGATCTACCTCTGGTTGGGTTGGT CGGTGTGGTATTAGCCGATACCGGTCTGCATCTGCCCGACTTTCGTAGTGGCGAGCGGGCATTTCAACTTCTGACCCAGG TTGCTGGACGAGCAGGGCGACGGAGTGAAGGGGCGCAGGTCATTATTCAGACCTATCAACCCGATCACTATGCACTTCAG GCCGCCTGTGAGCACGACTACCGGGCATTTTTTCGGGAAGAGATCGCCTTCCGGCGGGCACTGGCTTATCCGCCCTTTGG CCGATTGGTACGTTTCGTCACCACCGCAGCAACCGAGTCAATCTGTCGACGACAGGCCGAACAGCTTGCTGTTACCTTGC AGACGTACATCACCGGTCGTGATTTGGTCGGCTGGCGTCTGATCGGACCGGCGCCGGCATTCTTTCGCCGACAACGTGAT CGGTGGCGCTGGCACGTGTTGTTGCGGGTGCCACCGGCTACAGACATCCGGGAGATACGTCTGGCCCTGGACGCGGTTGG CCCGTTGTACGGTTGGGTGATCGATATTGATCCGGTGCATGTGTTGTGA
Upstream 100 bases:
>100_bases AGAAGCCAGCCCGTTGCCGGCCCGAGACCCTCCAGCGATCCGAAGGGATAGTATATCATAAAGCCGGAATATCGCTGCAA TCTGAGGTGATTCGTTGTCT
Downstream 100 bases:
>100_bases GGGAGGGGGTGAGCACGGTGAGACTCTAAGAGTTTTCAATACTGATCGTAAGTCTAAGTATTGTCTAAGAGTGGCGCCAC ACAAAGACGACATCTGAACC
Product: primosomal protein N'
Products: NA
Alternate protein names: ATP-dependent helicase priA; Replication factor Y [H]
Number of amino acids: Translated: 842; Mature: 842
Protein sequence:
>842_residues MNPVSELVADVAVLTDSLPSQHQGIFSYRVPDHLQAAIAIGQLVWVPLRQQQVQGVVLAMQRRTVSGLRDLIDLVDPDLS IPQLTIQLAHWVAENCYTTLAAVLDLCLPPGMIRQAVTTWRATAAGLTCELGALPERERAILFYLRRHGELSEADLRAAL RGSDANLRAAYRSLAERGLITRRLRIDPPRVRPQQEQFVRLTLPDLDQAIAELRRAPRQAAALRWLAERTTSDPPTVNEL RRATGIDSTGIRALERRGFVQLVGREIYRDPLATVHPATDTPPPLTSAQRVAYETIVTALEAGTGGRFLLYGITGSGKTE VYLRLIARALRLGRQALVLAPEIALTTQLVRRFVARFGHQLAVLHSGLSDGERYDEWRRLRRGEARVAIGARSALFAPLP DLGLVIVDEEHEPGYKSDAAPRYHARDAALHLADLAGVTVVLGSATPSVETYYAARNGQIQLLELPERIGAQIGVDGLVH SRPLPLPPVRIVDMRHELQQGNTSIFSIKLQHALAQTLARGQQAILFLNRRGAASFVFCRDCGYVARCERCAAPLTVHYD TATTAEAGESVRVLICHSCGQRTATPVVCPQCLSHRIRASGIGTQRVAEVVRELFPDARVARWDRDSISGKNAHDALLEA MVRHEIDVLVGTQMIAKGLDLPLVGLVGVVLADTGLHLPDFRSGERAFQLLTQVAGRAGRRSEGAQVIIQTYQPDHYALQ AACEHDYRAFFREEIAFRRALAYPPFGRLVRFVTTAATESICRRQAEQLAVTLQTYITGRDLVGWRLIGPAPAFFRRQRD RWRWHVLLRVPPATDIREIRLALDAVGPLYGWVIDIDPVHVL
Sequences:
>Translated_842_residues MNPVSELVADVAVLTDSLPSQHQGIFSYRVPDHLQAAIAIGQLVWVPLRQQQVQGVVLAMQRRTVSGLRDLIDLVDPDLS IPQLTIQLAHWVAENCYTTLAAVLDLCLPPGMIRQAVTTWRATAAGLTCELGALPERERAILFYLRRHGELSEADLRAAL RGSDANLRAAYRSLAERGLITRRLRIDPPRVRPQQEQFVRLTLPDLDQAIAELRRAPRQAAALRWLAERTTSDPPTVNEL RRATGIDSTGIRALERRGFVQLVGREIYRDPLATVHPATDTPPPLTSAQRVAYETIVTALEAGTGGRFLLYGITGSGKTE VYLRLIARALRLGRQALVLAPEIALTTQLVRRFVARFGHQLAVLHSGLSDGERYDEWRRLRRGEARVAIGARSALFAPLP DLGLVIVDEEHEPGYKSDAAPRYHARDAALHLADLAGVTVVLGSATPSVETYYAARNGQIQLLELPERIGAQIGVDGLVH SRPLPLPPVRIVDMRHELQQGNTSIFSIKLQHALAQTLARGQQAILFLNRRGAASFVFCRDCGYVARCERCAAPLTVHYD TATTAEAGESVRVLICHSCGQRTATPVVCPQCLSHRIRASGIGTQRVAEVVRELFPDARVARWDRDSISGKNAHDALLEA MVRHEIDVLVGTQMIAKGLDLPLVGLVGVVLADTGLHLPDFRSGERAFQLLTQVAGRAGRRSEGAQVIIQTYQPDHYALQ AACEHDYRAFFREEIAFRRALAYPPFGRLVRFVTTAATESICRRQAEQLAVTLQTYITGRDLVGWRLIGPAPAFFRRQRD RWRWHVLLRVPPATDIREIRLALDAVGPLYGWVIDIDPVHVL >Mature_842_residues MNPVSELVADVAVLTDSLPSQHQGIFSYRVPDHLQAAIAIGQLVWVPLRQQQVQGVVLAMQRRTVSGLRDLIDLVDPDLS IPQLTIQLAHWVAENCYTTLAAVLDLCLPPGMIRQAVTTWRATAAGLTCELGALPERERAILFYLRRHGELSEADLRAAL RGSDANLRAAYRSLAERGLITRRLRIDPPRVRPQQEQFVRLTLPDLDQAIAELRRAPRQAAALRWLAERTTSDPPTVNEL RRATGIDSTGIRALERRGFVQLVGREIYRDPLATVHPATDTPPPLTSAQRVAYETIVTALEAGTGGRFLLYGITGSGKTE VYLRLIARALRLGRQALVLAPEIALTTQLVRRFVARFGHQLAVLHSGLSDGERYDEWRRLRRGEARVAIGARSALFAPLP DLGLVIVDEEHEPGYKSDAAPRYHARDAALHLADLAGVTVVLGSATPSVETYYAARNGQIQLLELPERIGAQIGVDGLVH SRPLPLPPVRIVDMRHELQQGNTSIFSIKLQHALAQTLARGQQAILFLNRRGAASFVFCRDCGYVARCERCAAPLTVHYD TATTAEAGESVRVLICHSCGQRTATPVVCPQCLSHRIRASGIGTQRVAEVVRELFPDARVARWDRDSISGKNAHDALLEA MVRHEIDVLVGTQMIAKGLDLPLVGLVGVVLADTGLHLPDFRSGERAFQLLTQVAGRAGRRSEGAQVIIQTYQPDHYALQ AACEHDYRAFFREEIAFRRALAYPPFGRLVRFVTTAATESICRRQAEQLAVTLQTYITGRDLVGWRLIGPAPAFFRRQRD RWRWHVLLRVPPATDIREIRLALDAVGPLYGWVIDIDPVHVL
Specific function: Recognizes a specific hairpin sequence on phiX ssDNA. This structure is then recognized and bound by proteins priB and priC. Formation of the primosome proceeds with the subsequent actions of dnaB, dnaC, dnaT and primase. PriA then functions as a helicase
COG id: COG1198
COG function: function code L; Primosomal protein N' (replication factor Y) - superfamily II helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1790370, Length=644, Percent_Identity=35.7142857142857, Blast_Score=345, Evalue=7e-96,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR005259 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: NA
Molecular weight: Translated: 93269; Mature: 93269
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPVSELVADVAVLTDSLPSQHQGIFSYRVPDHLQAAIAIGQLVWVPLRQQQVQGVVLAM CCHHHHHHHHHHHHHHCCCCHHCCEEEECCCHHHHHHHHHHHHHEECCHHHHHHHHHHHH QRRTVSGLRDLIDLVDPDLSIPQLTIQLAHWVAENCYTTLAAVLDLCLPPGMIRQAVTTW HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RATAAGLTCELGALPERERAILFYLRRHGELSEADLRAALRGSDANLRAAYRSLAERGLI HHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHH TRRLRIDPPRVRPQQEQFVRLTLPDLDQAIAELRRAPRQAAALRWLAERTTSDPPTVNEL EEEEECCCCCCCCCHHCEEEEECCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHH RRATGIDSTGIRALERRGFVQLVGREIYRDPLATVHPATDTPPPLTSAQRVAYETIVTAL HHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH EAGTGGRFLLYGITGSGKTEVYLRLIARALRLGRQALVLAPEIALTTQLVRRFVARFGHQ HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCH LAVLHSGLSDGERYDEWRRLRRGEARVAIGARSALFAPLPDLGLVIVDEEHEPGYKSDAA HHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCCC PRYHARDAALHLADLAGVTVVLGSATPSVETYYAARNGQIQLLELPERIGAQIGVDGLVH CCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHCCCCCCCCCHHC SRPLPLPPVRIVDMRHELQQGNTSIFSIKLQHALAQTLARGQQAILFLNRRGAASFVFCR CCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCEEEEEEECCCCCEEEEEE DCGYVARCERCAAPLTVHYDTATTAEAGESVRVLICHSCGQRTATPVVCPQCLSHRIRAS CCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHC GIGTQRVAEVVRELFPDARVARWDRDSISGKNAHDALLEAMVRHEIDVLVGTQMIAKGLD CCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC LPLVGLVGVVLADTGLHLPDFRSGERAFQLLTQVAGRAGRRSEGAQVIIQTYQPDHYALQ CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHH AACEHDYRAFFREEIAFRRALAYPPFGRLVRFVTTAATESICRRQAEQLAVTLQTYITGR HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DLVGWRLIGPAPAFFRRQRDRWRWHVLLRVPPATDIREIRLALDAVGPLYGWVIDIDPVH CCCCEEEECCCHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHEEEEECCCEE VL CC >Mature Secondary Structure MNPVSELVADVAVLTDSLPSQHQGIFSYRVPDHLQAAIAIGQLVWVPLRQQQVQGVVLAM CCHHHHHHHHHHHHHHCCCCHHCCEEEECCCHHHHHHHHHHHHHEECCHHHHHHHHHHHH QRRTVSGLRDLIDLVDPDLSIPQLTIQLAHWVAENCYTTLAAVLDLCLPPGMIRQAVTTW HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RATAAGLTCELGALPERERAILFYLRRHGELSEADLRAALRGSDANLRAAYRSLAERGLI HHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHH TRRLRIDPPRVRPQQEQFVRLTLPDLDQAIAELRRAPRQAAALRWLAERTTSDPPTVNEL EEEEECCCCCCCCCHHCEEEEECCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHH RRATGIDSTGIRALERRGFVQLVGREIYRDPLATVHPATDTPPPLTSAQRVAYETIVTAL HHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH EAGTGGRFLLYGITGSGKTEVYLRLIARALRLGRQALVLAPEIALTTQLVRRFVARFGHQ HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCH LAVLHSGLSDGERYDEWRRLRRGEARVAIGARSALFAPLPDLGLVIVDEEHEPGYKSDAA HHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCCC PRYHARDAALHLADLAGVTVVLGSATPSVETYYAARNGQIQLLELPERIGAQIGVDGLVH CCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHCCCCCCCCCHHC SRPLPLPPVRIVDMRHELQQGNTSIFSIKLQHALAQTLARGQQAILFLNRRGAASFVFCR CCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCEEEEEEECCCCCEEEEEE DCGYVARCERCAAPLTVHYDTATTAEAGESVRVLICHSCGQRTATPVVCPQCLSHRIRAS CCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHC GIGTQRVAEVVRELFPDARVARWDRDSISGKNAHDALLEAMVRHEIDVLVGTQMIAKGLD CCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC LPLVGLVGVVLADTGLHLPDFRSGERAFQLLTQVAGRAGRRSEGAQVIIQTYQPDHYALQ CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHH AACEHDYRAFFREEIAFRRALAYPPFGRLVRFVTTAATESICRRQAEQLAVTLQTYITGR HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DLVGWRLIGPAPAFFRRQRDRWRWHVLLRVPPATDIREIRLALDAVGPLYGWVIDIDPVH CCCCEEEECCCHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHEEEEECCCEE VL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9534248; 9384377; 9086272 [H]