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The map label for this gene is yjgF [C]

Identifier: 222527248

GI number: 222527248

Start: 4982542

End: 4982922

Strand: Reverse

Name: yjgF [C]

Synonym: Chy400_4032

Alternate gene names: 222527248

Gene position: 4982922-4982542 (Counterclockwise)

Preceding gene: 222527249

Following gene: 222527247

Centisome position: 94.57

GC content: 57.22

Gene sequence:

>381_bases
ATGGAACGCACACCCATTAGTACCGACGCTGCTCCGGCAGCAATTGGGCCGTATTCACAGGCCATTCGGGCCGGTAATCT
GATCTTTGTGTCCGGGCAGTTGCCGATCAATCCGGCTACCGGTGAACTGATCACCGACGACATTGGGGCAATGACCCGGC
AGATTTTTGCGAATATCGCTGCGATCCTCCAGGCCGCCGGTAGCTCGCTCGATCGCATTGTGAAGACCACCGTCTTCCTT
GCCGATCTGAACGATTTTGCCGCGATGAATGCGTCCTACGCCGAACATTTCGGTGATGCACCACCGGCCCGTTCGACGGT
ACAGGTGGCGCGTTTGCCTCGCGATGCCCGGATCGAGATCGAAGTTATTGCATTAGCCTGA

Upstream 100 bases:

>100_bases
GATGGTTCACAGGTGATCCTCGGTGGTCTACTCCCTGTGATCTGGAATATCTTTGTGATGCTTGGGTTCTGGCTCTTACG
TTAAGCGAGGTATGACACCA

Downstream 100 bases:

>100_bases
AATCCACTGCAACGTTTGCCGCTGTTGTCCGGTTTACTATACAGAGCACACACGTATAGTGAACCAGAGAATAATATGCA
ACAGCGGCTGTGGTGGTTTA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MERTPISTDAAPAAIGPYSQAIRAGNLIFVSGQLPINPATGELITDDIGAMTRQIFANIAAILQAAGSSLDRIVKTTVFL
ADLNDFAAMNASYAEHFGDAPPARSTVQVARLPRDARIEIEVIALA

Sequences:

>Translated_126_residues
MERTPISTDAAPAAIGPYSQAIRAGNLIFVSGQLPINPATGELITDDIGAMTRQIFANIAAILQAAGSSLDRIVKTTVFL
ADLNDFAAMNASYAEHFGDAPPARSTVQVARLPRDARIEIEVIALA
>Mature_126_residues
MERTPISTDAAPAAIGPYSQAIRAGNLIFVSGQLPINPATGELITDDIGAMTRQIFANIAAILQAAGSSLDRIVKTTVFL
ADLNDFAAMNASYAEHFGDAPPARSTVQVARLPRDARIEIEVIALA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=45.5284552845528, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=53.90625, Blast_Score=132, Evalue=8e-33,
Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=48.780487804878, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=29.8387096774194, Blast_Score=70, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=46.7741935483871, Blast_Score=117, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=46.7741935483871, Blast_Score=117, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=46.7741935483871, Blast_Score=117, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=122, Percent_Identity=47.5409836065574, Blast_Score=117, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6320899, Length=121, Percent_Identity=46.2809917355372, Blast_Score=99, Evalue=1e-22,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=43.9024390243902, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13264; Mature: 13264

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERTPISTDAAPAAIGPYSQAIRAGNLIFVSGQLPINPATGELITDDIGAMTRQIFANIA
CCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AILQAAGSSLDRIVKTTVFLADLNDFAAMNASYAEHFGDAPPARSTVQVARLPRDARIEI
HHHHHHCCHHHHHHHHHHHHHCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHCCCCCCEEE
EVIALA
EEEEEC
>Mature Secondary Structure
MERTPISTDAAPAAIGPYSQAIRAGNLIFVSGQLPINPATGELITDDIGAMTRQIFANIA
CCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AILQAAGSSLDRIVKTTVFLADLNDFAAMNASYAEHFGDAPPARSTVQVARLPRDARIEI
HHHHHHCCHHHHHHHHHHHHHCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHCCCCCCEEE
EVIALA
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]