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The map label for this gene is 222527164

Identifier: 222527164

GI number: 222527164

Start: 4898172

End: 4898735

Strand: Reverse

Name: 222527164

Synonym: Chy400_3946

Alternate gene names: NA

Gene position: 4898735-4898172 (Counterclockwise)

Preceding gene: 222527168

Following gene: 222527157

Centisome position: 92.97

GC content: 73.05

Gene sequence:

>564_bases
ATGGCTTCTCCGTGTGGCGTCACCACGAAATCCGGTGCGCGCCGCGGCTCTGCCAGCGTACCGACGGCCGCACTAGCGGG
TGTAGTCGCCGCCTCCGCCACCCCCGCCCCACCCCGCGCCGCCGCCTGCGCCGCACCCGCCGATGAGGCGGCGTGGGCTA
TGGCGGGCAGGGCACCCGCTGCCTCATCGGCGTGGGCAGCGGCGCGGATCAGTGCCCATCCGCCGCCGGGGACGACGGGC
AGCACGGTGGTGGTGTGCAGGGTCGGGGTGGACTATCACGTCGCGCCACGCTCCCGGCTCAGCGGCTCAGCCGTGTGCCG
GCCAGGTCCCTCATCGCGCGTACCCGCCGGCGTGGCGTACGGGGCGCTGATAGTGCGCGTGCCCCCCTCCTCTGCCGCTA
TCGTTGTGTTCGTGCTGACCGTGGCCTGGCCGATGGCCGTCAGGCGGTCGTCGTACCGGTGGCGGCGCCGGGATCCCTCG
TTGCCTTGTCCGCCCTCACCCCAGCGCGACCCGCTCACGCTGAGGCCACAACCCGGATCGGTTCACAGCCAACAAGCTGC
GTGA

Upstream 100 bases:

>100_bases
GGACACACGCTGGTCGAGCCCTTTCCCGCCCGATCCCCCGATATATTGAAACCCCGGCGCCCGGGTGGAGAGCGGACCGA
CGGCGCCATCAGGAACCGGA

Downstream 100 bases:

>100_bases
CCCCCATCGCCAGCAGCAGGCGGTAGACCCGGTTTGAGATGATGACGATGCGCCCTGTGGCCCTGCCGCCATCCCCGAAC
ACCTCATACGAGGCATTGAC

Product: TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MASPCGVTTKSGARRGSASVPTAALAGVVAASATPAPPRAAACAAPADEAAWAMAGRAPAASSAWAAARISAHPPPGTTG
STVVVCRVGVDYHVAPRSRLSGSAVCRPGPSSRVPAGVAYGALIVRVPPSSAAIVVFVLTVAWPMAVRRSSYRWRRRDPS
LPCPPSPQRDPLTLRPQPGSVHSQQAA

Sequences:

>Translated_187_residues
MASPCGVTTKSGARRGSASVPTAALAGVVAASATPAPPRAAACAAPADEAAWAMAGRAPAASSAWAAARISAHPPPGTTG
STVVVCRVGVDYHVAPRSRLSGSAVCRPGPSSRVPAGVAYGALIVRVPPSSAAIVVFVLTVAWPMAVRRSSYRWRRRDPS
LPCPPSPQRDPLTLRPQPGSVHSQQAA
>Mature_186_residues
ASPCGVTTKSGARRGSASVPTAALAGVVAASATPAPPRAAACAAPADEAAWAMAGRAPAASSAWAAARISAHPPPGTTGS
TVVVCRVGVDYHVAPRSRLSGSAVCRPGPSSRVPAGVAYGALIVRVPPSSAAIVVFVLTVAWPMAVRRSSYRWRRRDPSL
PCPPSPQRDPLTLRPQPGSVHSQQAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18899; Mature: 18768

Theoretical pI: Translated: 12.06; Mature: 12.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPCGVTTKSGARRGSASVPTAALAGVVAASATPAPPRAAACAAPADEAAWAMAGRAPA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
ASSAWAAARISAHPPPGTTGSTVVVCRVGVDYHVAPRSRLSGSAVCRPGPSSRVPAGVAY
CCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCEEECCCCCCCCCCCEEE
GALIVRVPPSSAAIVVFVLTVAWPMAVRRSSYRWRRRDPSLPCPPSPQRDPLTLRPQPGS
EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCEEECCCCCC
VHSQQAA
CCCCCCC
>Mature Secondary Structure 
ASPCGVTTKSGARRGSASVPTAALAGVVAASATPAPPRAAACAAPADEAAWAMAGRAPA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
ASSAWAAARISAHPPPGTTGSTVVVCRVGVDYHVAPRSRLSGSAVCRPGPSSRVPAGVAY
CCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCEEECCCCCCCCCCCEEE
GALIVRVPPSSAAIVVFVLTVAWPMAVRRSSYRWRRRDPSLPCPPSPQRDPLTLRPQPGS
EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCEEECCCCCC
VHSQQAA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA