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The map label for this gene is yqfA [C]

Identifier: 222526883

GI number: 222526883

Start: 4562512

End: 4563159

Strand: Reverse

Name: yqfA [C]

Synonym: Chy400_3660

Alternate gene names: 222526883

Gene position: 4563159-4562512 (Counterclockwise)

Preceding gene: 222526884

Following gene: 222526876

Centisome position: 86.6

GC content: 57.56

Gene sequence:

>648_bases
ATGACACCAACACACCAACCTGAACACTTCTCACCTGCCGAAGAGCGGATCAATGTGATAACCCACGGCTTCGGCGCTAT
CGCCAGTGCAATTGCCGGTGCCATCCTCATCGGCGTGGTCTGGCAGCGGGGTGATGGCTGGCAGATTGCCGGTGCTACAA
CCTTCTGCGTGACGCTAACCCTGCTCTACCTGGCTTCGACCCTCTACCACGCCAGCCGAACACCACGCCGACGGGCCATC
CTCGAAATATGCGATCACAGTGCGATCTTTCTGTTGATCGCCGGTACCTACACCCCCTTCACGCTGATCAGCCTGCGCGG
TACGTGGGGCTGGCTCTTGTTTGGGCTGGTCTGGGGATTGACGCTTGCGGGCGTAATCATGAAACTGTTTCTCACCGGAC
GCTTTCGCCTGCTCTCGACGCTGGTCTACATCGGGCTGGGATGGCTGGTGGTGATCGTTGCCGACCAGGTATTGACTGTC
CTGAGTCCGTTTACCATCGGTCTGCTGGTAGCGGGCGGCATTGCGTATACCCTCGGCACACCGTTCTATATGTTGTCGCG
ACTGCGCTACATGCACGCCATCTGGCACGGTTTTGTTTTGATCGGTAGCCTCTGCCATTTTATTGCCGTCAGCTCGATTG
TGATCTGA

Upstream 100 bases:

>100_bases
TCATACTGCAAACATGACGGGCGACACTTGTCAATGATCAACGAAGAGTGCATACTGGCAGTGGAACGTCACGCCTGCTG
TGCTGAGTAGATAGAGTACC

Downstream 100 bases:

>100_bases
CGACCACACAAAAACGGAGCGCATGGTCGTGCGCTCCGTCTCATTGCATACCCATCCTAGAAAATTGCCAGATAGCGCTC
AATCTCCCACTGCGAGACAT

Product: channel protein, hemolysin III family

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTPTHQPEHFSPAEERINVITHGFGAIASAIAGAILIGVVWQRGDGWQIAGATTFCVTLTLLYLASTLYHASRTPRRRAI
LEICDHSAIFLLIAGTYTPFTLISLRGTWGWLLFGLVWGLTLAGVIMKLFLTGRFRLLSTLVYIGLGWLVVIVADQVLTV
LSPFTIGLLVAGGIAYTLGTPFYMLSRLRYMHAIWHGFVLIGSLCHFIAVSSIVI

Sequences:

>Translated_215_residues
MTPTHQPEHFSPAEERINVITHGFGAIASAIAGAILIGVVWQRGDGWQIAGATTFCVTLTLLYLASTLYHASRTPRRRAI
LEICDHSAIFLLIAGTYTPFTLISLRGTWGWLLFGLVWGLTLAGVIMKLFLTGRFRLLSTLVYIGLGWLVVIVADQVLTV
LSPFTIGLLVAGGIAYTLGTPFYMLSRLRYMHAIWHGFVLIGSLCHFIAVSSIVI
>Mature_214_residues
TPTHQPEHFSPAEERINVITHGFGAIASAIAGAILIGVVWQRGDGWQIAGATTFCVTLTLLYLASTLYHASRTPRRRAIL
EICDHSAIFLLIAGTYTPFTLISLRGTWGWLLFGLVWGLTLAGVIMKLFLTGRFRLLSTLVYIGLGWLVVIVADQVLTVL
SPFTIGLLVAGGIAYTLGTPFYMLSRLRYMHAIWHGFVLIGSLCHFIAVSSIVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=214, Percent_Identity=28.9719626168224, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI154759277, Length=238, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1789266, Length=206, Percent_Identity=41.2621359223301, Blast_Score=147, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI71996356, Length=162, Percent_Identity=32.7160493827161, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23545; Mature: 23414

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTHQPEHFSPAEERINVITHGFGAIASAIAGAILIGVVWQRGDGWQIAGATTFCVTLT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHH
LLYLASTLYHASRTPRRRAILEICDHSAIFLLIAGTYTPFTLISLRGTWGWLLFGLVWGL
HHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHH
TLAGVIMKLFLTGRFRLLSTLVYIGLGWLVVIVADQVLTVLSPFTIGLLVAGGIAYTLGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFYMLSRLRYMHAIWHGFVLIGSLCHFIAVSSIVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPTHQPEHFSPAEERINVITHGFGAIASAIAGAILIGVVWQRGDGWQIAGATTFCVTLT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHH
LLYLASTLYHASRTPRRRAILEICDHSAIFLLIAGTYTPFTLISLRGTWGWLLFGLVWGL
HHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHH
TLAGVIMKLFLTGRFRLLSTLVYIGLGWLVVIVADQVLTVLSPFTIGLLVAGGIAYTLGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFYMLSRLRYMHAIWHGFVLIGSLCHFIAVSSIVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]