Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
---|---|
Accession | NC_012032 |
Length | 5,268,950 |
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The map label for this gene is yoxD [H]
Identifier: 222526764
GI number: 222526764
Start: 4408099
End: 4408917
Strand: Reverse
Name: yoxD [H]
Synonym: Chy400_3538
Alternate gene names: 222526764
Gene position: 4408917-4408099 (Counterclockwise)
Preceding gene: 222526765
Following gene: 222526757
Centisome position: 83.68
GC content: 57.39
Gene sequence:
>819_bases ATGGCTCGTACACCATCCGACTTACGCGATCTGAAAGCCGTCGTCACCGGCGGCAGCCGTGGGATTGGCCGGGCAATTGC TGAAGCGCTGGCCCGTGCCGGTGCGCAGGTTATTATCTCATCAACCAATCCAACCAACCTTACTGAAGCTGAACGCGCGT TGCAGGCTGCTGGTTTGAACGTCACCGGTATTCGCTGCGATGTCGCCAATCGCAACGAGGTTGAAGCCCTGGCAAGTGCC GCTGTGGAAAGGATGGGACGGATCGATCTCTGGGTCAACAACGCCGGCATCTCAGGGCCATTCGGCTATGCACTGGACAT ACCGCCCGATGCCTGGGAACAGGTGATCAGGGTCAATCTGCTCGGTACCTATTACGGTTGTCGGGCAGCATTGCCGTACA TGATCAAACAACGTAACGGTCAGATCATCAATCTCTCCGGTGGTGGGGCAAAACGTGCCCAGCGCTTTCTCTCGGCATAC AGCACATCAAAAGCGGCGATTGTACGTCTGACCGAAGCCTTTGCCCGCGACTATCAAGACCACCCCTACCTGCGCTTCAA CGTGCTCACCCCTGGGATGGTGCCGACAGACATGATCAATCATTTTGAAACGGTTGGCCCCGGTGGTGAGGCGATCAAGC AATTGCCCCGCGTCCTCCGCATCTTCGGCACGACAGCCGAAGAGACAGCCGAACTCGCCCTACGCATTGTGCGCGAGGGT AAAAACGGTCAGGTCTTCGAGGTCATGCCACGTCATCGAACAATCTGGCGCCTGCTCAAGGCAGCCCTTGCACGGCGTAA CAACGGTTCAACAGGATGA
Upstream 100 bases:
>100_bases CGTGGCGTGTCAATTCGTGCTGTCCGGGAAGGTGATCACCTGACTATCCGACGCCGTTAACCTGTTTGGAGTTCGCTTGT TTTGTGCCAGTGAGGAGATC
Downstream 100 bases:
>100_bases ACGAGTAACGGGATGACGAGAAGCAGGACTTCGCTATCAATGCGTGGTACGCGATTCAAGGCGTAACTGTTCGCCGTATC TCTTAGATGGCAATGTGAAC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MARTPSDLRDLKAVVTGGSRGIGRAIAEALARAGAQVIISSTNPTNLTEAERALQAAGLNVTGIRCDVANRNEVEALASA AVERMGRIDLWVNNAGISGPFGYALDIPPDAWEQVIRVNLLGTYYGCRAALPYMIKQRNGQIINLSGGGAKRAQRFLSAY STSKAAIVRLTEAFARDYQDHPYLRFNVLTPGMVPTDMINHFETVGPGGEAIKQLPRVLRIFGTTAEETAELALRIVREG KNGQVFEVMPRHRTIWRLLKAALARRNNGSTG
Sequences:
>Translated_272_residues MARTPSDLRDLKAVVTGGSRGIGRAIAEALARAGAQVIISSTNPTNLTEAERALQAAGLNVTGIRCDVANRNEVEALASA AVERMGRIDLWVNNAGISGPFGYALDIPPDAWEQVIRVNLLGTYYGCRAALPYMIKQRNGQIINLSGGGAKRAQRFLSAY STSKAAIVRLTEAFARDYQDHPYLRFNVLTPGMVPTDMINHFETVGPGGEAIKQLPRVLRIFGTTAEETAELALRIVREG KNGQVFEVMPRHRTIWRLLKAALARRNNGSTG >Mature_271_residues ARTPSDLRDLKAVVTGGSRGIGRAIAEALARAGAQVIISSTNPTNLTEAERALQAAGLNVTGIRCDVANRNEVEALASAA VERMGRIDLWVNNAGISGPFGYALDIPPDAWEQVIRVNLLGTYYGCRAALPYMIKQRNGQIINLSGGGAKRAQRFLSAYS TSKAAIVRLTEAFARDYQDHPYLRFNVLTPGMVPTDMINHFETVGPGGEAIKQLPRVLRIFGTTAEETAELALRIVREGK NGQVFEVMPRHRTIWRLLKAALARRNNGSTG
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=209, Percent_Identity=32.0574162679426, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI5031737, Length=200, Percent_Identity=36, Blast_Score=107, Evalue=8e-24, Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=36.5591397849462, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI126723191, Length=163, Percent_Identity=33.7423312883436, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI19923817, Length=197, Percent_Identity=31.9796954314721, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4503817, Length=249, Percent_Identity=30.9236947791165, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI31542939, Length=223, Percent_Identity=31.390134529148, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI59889578, Length=180, Percent_Identity=31.1111111111111, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI20149619, Length=207, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI109715829, Length=198, Percent_Identity=31.3131313131313, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI310128830, Length=265, Percent_Identity=26.0377358490566, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI310115468, Length=265, Percent_Identity=26.0377358490566, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI126723750, Length=213, Percent_Identity=29.1079812206573, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=34.7058823529412, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI7706318, Length=232, Percent_Identity=24.5689655172414, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI209862901, Length=234, Percent_Identity=29.9145299145299, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI19923983, Length=234, Percent_Identity=29.9145299145299, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI66933014, Length=171, Percent_Identity=32.7485380116959, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI142976729, Length=213, Percent_Identity=25.3521126760563, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI40254986, Length=141, Percent_Identity=34.0425531914894, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI10190704, Length=194, Percent_Identity=30.4123711340206, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI31543615, Length=201, Percent_Identity=32.3383084577114, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40807363, Length=257, Percent_Identity=24.124513618677, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4758504, Length=214, Percent_Identity=30.3738317757009, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4504505, Length=244, Percent_Identity=29.9180327868852, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI15277342, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082100, Length=187, Percent_Identity=35.8288770053476, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87082160, Length=191, Percent_Identity=31.413612565445, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787335, Length=186, Percent_Identity=31.1827956989247, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787905, Length=187, Percent_Identity=30.4812834224599, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790717, Length=187, Percent_Identity=27.807486631016, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788459, Length=234, Percent_Identity=30.3418803418803, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1789208, Length=187, Percent_Identity=30.4812834224599, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789378, Length=189, Percent_Identity=26.4550264550265, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787820, Length=239, Percent_Identity=25.5230125523013, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI2367175, Length=195, Percent_Identity=30.2564102564103, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787526, Length=207, Percent_Identity=29.4685990338164, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI2367365, Length=185, Percent_Identity=30.8108108108108, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=28.804347826087, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17561402, Length=223, Percent_Identity=32.2869955156951, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17531453, Length=217, Percent_Identity=31.7972350230415, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17560676, Length=207, Percent_Identity=26.5700483091787, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI193204405, Length=191, Percent_Identity=34.0314136125654, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17538182, Length=203, Percent_Identity=34.9753694581281, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17562906, Length=193, Percent_Identity=31.6062176165803, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI25147288, Length=188, Percent_Identity=31.9148936170213, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559104, Length=193, Percent_Identity=32.1243523316062, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17562908, Length=193, Percent_Identity=29.5336787564767, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538486, Length=203, Percent_Identity=32.512315270936, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17564282, Length=199, Percent_Identity=26.1306532663317, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538480, Length=191, Percent_Identity=32.4607329842932, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562904, Length=195, Percent_Identity=29.2307692307692, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17560150, Length=188, Percent_Identity=29.7872340425532, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17568967, Length=207, Percent_Identity=27.536231884058, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17562910, Length=217, Percent_Identity=27.6497695852535, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17551412, Length=199, Percent_Identity=30.1507537688442, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=30.0518134715026, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71994600, Length=194, Percent_Identity=27.8350515463918, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17560220, Length=193, Percent_Identity=30.5699481865285, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17508895, Length=247, Percent_Identity=23.0769230769231, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193203115, Length=203, Percent_Identity=24.6305418719212, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71997099, Length=251, Percent_Identity=30.2788844621514, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17544670, Length=213, Percent_Identity=24.4131455399061, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17563726, Length=191, Percent_Identity=28.2722513089005, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17562990, Length=191, Percent_Identity=28.2722513089005, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193203117, Length=197, Percent_Identity=24.3654822335025, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565030, Length=211, Percent_Identity=28.436018957346, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115534694, Length=193, Percent_Identity=31.6062176165803, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17558006, Length=234, Percent_Identity=28.6324786324786, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17536025, Length=193, Percent_Identity=29.0155440414508, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI72000259, Length=193, Percent_Identity=28.4974093264249, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17555612, Length=210, Percent_Identity=30.4761904761905, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567345, Length=188, Percent_Identity=25.531914893617, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=251, Percent_Identity=28.2868525896414, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=241, Percent_Identity=26.9709543568465, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=249, Percent_Identity=26.5060240963855, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=157, Percent_Identity=33.1210191082803, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI21355319, Length=228, Percent_Identity=32.4561403508772, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=32.972972972973, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24665243, Length=255, Percent_Identity=30.1960784313725, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI24665247, Length=255, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI221331218, Length=248, Percent_Identity=30.6451612903226, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI221331216, Length=248, Percent_Identity=29.8387096774194, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI17737361, Length=204, Percent_Identity=32.3529411764706, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24639444, Length=191, Percent_Identity=32.9842931937173, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=30.9278350515464, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=29.5336787564767, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=29.2929292929293, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24641232, Length=197, Percent_Identity=27.9187817258883, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=30.3664921465969, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI116007238, Length=202, Percent_Identity=29.2079207920792, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24581726, Length=207, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357673, Length=190, Percent_Identity=26.8421052631579, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI221510726, Length=184, Percent_Identity=28.804347826087, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24665264, Length=248, Percent_Identity=25.8064516129032, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24656154, Length=250, Percent_Identity=30, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI19922628, Length=250, Percent_Identity=30, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=28.042328042328, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571387, Length=211, Percent_Identity=28.436018957346, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076933, Length=200, Percent_Identity=27.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584748, Length=200, Percent_Identity=27.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24649181, Length=201, Percent_Identity=26.3681592039801, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=30.1980198019802, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29527; Mature: 29396
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTPSDLRDLKAVVTGGSRGIGRAIAEALARAGAQVIISSTNPTNLTEAERALQAAGLN CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCC VTGIRCDVANRNEVEALASAAVERMGRIDLWVNNAGISGPFGYALDIPPDAWEQVIRVNL EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCHHHHHHHHHHHH LGTYYGCRAALPYMIKQRNGQIINLSGGGAKRAQRFLSAYSTSKAAIVRLTEAFARDYQD HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC HPYLRFNVLTPGMVPTDMINHFETVGPGGEAIKQLPRVLRIFGTTAEETAELALRIVREG CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC KNGQVFEVMPRHRTIWRLLKAALARRNNGSTG CCCCEEEECCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ARTPSDLRDLKAVVTGGSRGIGRAIAEALARAGAQVIISSTNPTNLTEAERALQAAGLN CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCC VTGIRCDVANRNEVEALASAAVERMGRIDLWVNNAGISGPFGYALDIPPDAWEQVIRVNL EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCHHHHHHHHHHHH LGTYYGCRAALPYMIKQRNGQIINLSGGGAKRAQRFLSAYSTSKAAIVRLTEAFARDYQD HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC HPYLRFNVLTPGMVPTDMINHFETVGPGGEAIKQLPRVLRIFGTTAEETAELALRIVREG CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC KNGQVFEVMPRHRTIWRLLKAALARRNNGSTG CCCCEEEECCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1849493; 9384377; 3118336 [H]