| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222526431
Identifier: 222526431
GI number: 222526431
Start: 3957487
End: 3958095
Strand: Direct
Name: 222526431
Synonym: Chy400_3198
Alternate gene names: NA
Gene position: 3957487-3958095 (Clockwise)
Preceding gene: 222526430
Following gene: 222526432
Centisome position: 75.11
GC content: 53.53
Gene sequence:
>609_bases ATGACGATGCCTGATCTTGATACGATTGAAGTCAGCGATATCAAACAGTGGCGTTACTGTCCGCGGGTTGTGTGGTACAC CTACTGCCTGCCTGCCATTCGTCCAAAGACAGATTTAATGCGTCAGGGAGCTGCGAGTCACCGTGCTGAGGAAGACCGGG AAGAGCGGCGTTCACTTCGCACATATGGCCTGAAAACCGGAGAGCGTTTCTTCCACGTCTATCTACGGTCAGAGCGACTT GGCGTCAGAGGAATCCTCGACCTGGCAATTGCAGTACCCAACCGGTCAGACCCGGCAGCAAAAATAGTCGTGGTTGACTA CAAAGATAGCGAGCAGGATGCCGGGCCGCACTTCAAACTTCAGGTAGGCGCCTACGCACTTCTCATAGAAGAGACGTGGG GTTTACCGGTAGAAACCGGATGGATATACCACATTCCATTACGGAAAGCGGAAAAAGTCCCAATCAGCCCCCAATTACGC AAAAACGTAATCGAAACGATTGCTGCGGTGCAAAAAGCCATTCGGACTGAAGCGCTACCACCGCCACCGTCGAGCCGGGC ACTCTGCGTCAACTGCGAGTTTCGCCGCTTCTGCAACGACGTCGTATAG
Upstream 100 bases:
>100_bases GGCGAAATAACCCGGCGGGTCAAAGGTCATACCGCAAACGTCCAACTTTTCGTCTTCGACAGCAAAACCTGGAGTGATCG GCGCATACTGGAGCAGCAAT
Downstream 100 bases:
>100_bases ATCGACCCTGAGAATAGTCATATACGTAGTCGATTCGCAACTGAGTACCGAAAGCCGTCATCAACAGCGTATTGGTACTC AGTTGCTCTACGTCCAATGA
Product: CRISPR-associated protein Cas4
Products: NA
Alternate protein names: RecB Family Exonuclease Protein
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MTMPDLDTIEVSDIKQWRYCPRVVWYTYCLPAIRPKTDLMRQGAASHRAEEDREERRSLRTYGLKTGERFFHVYLRSERL GVRGILDLAIAVPNRSDPAAKIVVVDYKDSEQDAGPHFKLQVGAYALLIEETWGLPVETGWIYHIPLRKAEKVPISPQLR KNVIETIAAVQKAIRTEALPPPPSSRALCVNCEFRRFCNDVV
Sequences:
>Translated_202_residues MTMPDLDTIEVSDIKQWRYCPRVVWYTYCLPAIRPKTDLMRQGAASHRAEEDREERRSLRTYGLKTGERFFHVYLRSERL GVRGILDLAIAVPNRSDPAAKIVVVDYKDSEQDAGPHFKLQVGAYALLIEETWGLPVETGWIYHIPLRKAEKVPISPQLR KNVIETIAAVQKAIRTEALPPPPSSRALCVNCEFRRFCNDVV >Mature_201_residues TMPDLDTIEVSDIKQWRYCPRVVWYTYCLPAIRPKTDLMRQGAASHRAEEDREERRSLRTYGLKTGERFFHVYLRSERLG VRGILDLAIAVPNRSDPAAKIVVVDYKDSEQDAGPHFKLQVGAYALLIEETWGLPVETGWIYHIPLRKAEKVPISPQLRK NVIETIAAVQKAIRTEALPPPPSSRALCVNCEFRRFCNDVV
Specific function: Unknown
COG id: COG1468
COG function: function code L; RecB family exonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23149; Mature: 23018
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMPDLDTIEVSDIKQWRYCPRVVWYTYCLPAIRPKTDLMRQGAASHRAEEDREERRSLR CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCHHHHHHHHHHHH TYGLKTGERFFHVYLRSERLGVRGILDLAIAVPNRSDPAAKIVVVDYKDSEQDAGPHFKL HHCCCCCCCEEEEEEECCCCCHHHEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEE QVGAYALLIEETWGLPVETGWIYHIPLRKAEKVPISPQLRKNVIETIAAVQKAIRTEALP EECEEEEEEECCCCCEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC PPPSSRALCVNCEFRRFCNDVV CCCCCCEEEECCHHHHHHHHCC >Mature Secondary Structure TMPDLDTIEVSDIKQWRYCPRVVWYTYCLPAIRPKTDLMRQGAASHRAEEDREERRSLR CCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCHHHHHHHHHHHH TYGLKTGERFFHVYLRSERLGVRGILDLAIAVPNRSDPAAKIVVVDYKDSEQDAGPHFKL HHCCCCCCCEEEEEEECCCCCHHHEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEE QVGAYALLIEETWGLPVETGWIYHIPLRKAEKVPISPQLRKNVIETIAAVQKAIRTEALP EECEEEEEEECCCCCEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC PPPSSRALCVNCEFRRFCNDVV CCCCCCEEEECCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA