| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is bioH [H]
Identifier: 222526103
GI number: 222526103
Start: 3541058
End: 3541894
Strand: Direct
Name: bioH [H]
Synonym: Chy400_2860
Alternate gene names: 222526103
Gene position: 3541058-3541894 (Clockwise)
Preceding gene: 222526102
Following gene: 222526105
Centisome position: 67.21
GC content: 53.76
Gene sequence:
>837_bases ATGAGCGTTATCCACCTCGATAACCGTCTGGCACACTACGAAGTCTTTGGTCGTGGCCAGCCGATCATCTTTCTGCATAG CTGGATCGGTTCGTGGCGCTATTGGGTGCCAATTATGGACATTGCTTCAGAGCGCCATCGCGCCTACGCCTTTGACTTCT GGGGGTTTGGCGAAAGCGACCGCCGTGGCGACCAGTTTACCGTGCCGACGTATGTCGAGATGTTGACTCAATTTATGGAT CGTCTTGGTATTGCGCGCGCTACGCTGGTTGGTCACGGCATGGGGGGTATGGTCGCGATCCTCGCTGCTCATCAACACCC TGAGCGATTCAACCGTCTGCTCACCGTCTGTACGCCATTACACGGTCAGGTATTGGCGCAACACATCAAGCCGGGCACAC TCTCGCGACTGTTGGGGATGAATACCAGCCAGAATGGCTGGGCACGTATGGTGCGGACATTGCAGGTGGCAGATGCTGAA ATTCAGCAGGAGATTGAAGAAGATACGTCGAGCCTGAGTGAGAAGGTATTGTCACAGGTTCACGAGTCGTTGTTAGAGAC CGATCTCCGCCCATACATCATCTCCTTGCAGACACCACTGCTGGCGGTCTACGGTGGGAAAGACCCGATTGTCAATGCTG CACATGCCGCATTTCTCAATGAACTGGCGGAGCGTCCGATCCAGTTGCTTGTGCTGCCTAAAGCCAGTCACTTTCCGTTT CTCGAACAGGCAAATACGTTTGGTCGGTTGTTACTCGATTTTCTGGTCTCGCAGGGAACTGCGATTGAGATCAAAGAAGA GTGGCGTCGCCGTGTCAATCAGCGAGAGTATTTGTGA
Upstream 100 bases:
>100_bases AGATTTGGGTGACGAGTGAATTAGGAAAGGGAAGCACATTTGCTTTTGCCATACCGCTACAGCAAGAGACAAATGGCTCG TACACCGAGGAGGTGGAACT
Downstream 100 bases:
>100_bases TATTTGGGTAGTGAAGACGGGAAGCAGGAGAGGTGACTCTGATACCTTCACCTGCCGATACGCCATCAGGCTGCGGATGA CGCTAACACTACGCTTCGAC
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: Biotin synthesis protein BioH [H]
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MSVIHLDNRLAHYEVFGRGQPIIFLHSWIGSWRYWVPIMDIASERHRAYAFDFWGFGESDRRGDQFTVPTYVEMLTQFMD RLGIARATLVGHGMGGMVAILAAHQHPERFNRLLTVCTPLHGQVLAQHIKPGTLSRLLGMNTSQNGWARMVRTLQVADAE IQQEIEEDTSSLSEKVLSQVHESLLETDLRPYIISLQTPLLAVYGGKDPIVNAAHAAFLNELAERPIQLLVLPKASHFPF LEQANTFGRLLLDFLVSQGTAIEIKEEWRRRVNQREYL
Sequences:
>Translated_278_residues MSVIHLDNRLAHYEVFGRGQPIIFLHSWIGSWRYWVPIMDIASERHRAYAFDFWGFGESDRRGDQFTVPTYVEMLTQFMD RLGIARATLVGHGMGGMVAILAAHQHPERFNRLLTVCTPLHGQVLAQHIKPGTLSRLLGMNTSQNGWARMVRTLQVADAE IQQEIEEDTSSLSEKVLSQVHESLLETDLRPYIISLQTPLLAVYGGKDPIVNAAHAAFLNELAERPIQLLVLPKASHFPF LEQANTFGRLLLDFLVSQGTAIEIKEEWRRRVNQREYL >Mature_277_residues SVIHLDNRLAHYEVFGRGQPIIFLHSWIGSWRYWVPIMDIASERHRAYAFDFWGFGESDRRGDQFTVPTYVEMLTQFMDR LGIARATLVGHGMGGMVAILAAHQHPERFNRLLTVCTPLHGQVLAQHIKPGTLSRLLGMNTSQNGWARMVRTLQVADAEI QQEIEEDTSSLSEKVLSQVHESLLETDLRPYIISLQTPLLAVYGGKDPIVNAAHAAFLNELAERPIQLLVLPKASHFPFL EQANTFGRLLLDFLVSQGTAIEIKEEWRRRVNQREYL
Specific function: Shows carboxylesterase activity with a preference for short chain fatty acid esters (acyl chain length of up to 6 carbons). Also displays a weak thioesterase activity. Can form a complex with CoA, and may be involved in the condensation of CoA and pimelic
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. Carboxylesterase BioH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR010076 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.1.1.1 [H]
Molecular weight: Translated: 31683; Mature: 31552
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVIHLDNRLAHYEVFGRGQPIIFLHSWIGSWRYWVPIMDIASERHRAYAFDFWGFGESD CCEEEECCCHHHEEEECCCCCEEEEEHHHCCHHHHHHHHHHHHCCHHEEEEEECCCCCCC RRGDQFTVPTYVEMLTQFMDRLGIARATLVGHGMGGMVAILAAHQHPERFNRLLTVCTPL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCH HGQVLAQHIKPGTLSRLLGMNTSQNGWARMVRTLQVADAEIQQEIEEDTSSLSEKVLSQV HHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HESLLETDLRPYIISLQTPLLAVYGGKDPIVNAAHAAFLNELAERPIQLLVLPKASHFPF HHHHHHCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCH LEQANTFGRLLLDFLVSQGTAIEIKEEWRRRVNQREYL HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCC >Mature Secondary Structure SVIHLDNRLAHYEVFGRGQPIIFLHSWIGSWRYWVPIMDIASERHRAYAFDFWGFGESD CEEEECCCHHHEEEECCCCCEEEEEHHHCCHHHHHHHHHHHHCCHHEEEEEECCCCCCC RRGDQFTVPTYVEMLTQFMDRLGIARATLVGHGMGGMVAILAAHQHPERFNRLLTVCTPL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCH HGQVLAQHIKPGTLSRLLGMNTSQNGWARMVRTLQVADAEIQQEIEEDTSSLSEKVLSQV HHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HESLLETDLRPYIISLQTPLLAVYGGKDPIVNAAHAAFLNELAERPIQLLVLPKASHFPF HHHHHHCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCH LEQANTFGRLLLDFLVSQGTAIEIKEEWRRRVNQREYL HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA