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The map label for this gene is ydcR [C]

Identifier: 222525977

GI number: 222525977

Start: 3370229

End: 3371362

Strand: Direct

Name: ydcR [C]

Synonym: Chy400_2733

Alternate gene names: 222525977

Gene position: 3370229-3371362 (Clockwise)

Preceding gene: 222525975

Following gene: 222525978

Centisome position: 63.96

GC content: 58.02

Gene sequence:

>1134_bases
ATGCTGCCGGACATTCAATTTGTACAACGCCCAGGAGTCATCGAGTTTGGTTGGGGGCATCTGGCTGCTGAACTCCTGCC
ACATACTGAATTATTACGGGCTGCAACCTGGACGCTGACCAACGATGCACCGGCAGCGTTGACCTATGGCTATGCGCAGG
GGCCGGGACGCCTGATCGCATTGTTAGCCGAGCGGATAGCAATCGCCGAACACGAACTGATGATTACCGGTGGTACCTCA
CAGGCGCTCGATATGCTCTGTAAGCACTTGAGTCAGCCGGGGGATGTCGTGCTGGTAGAAGCGCCGACCTATCACCTGGC
GCTACGCATTTTTCGCGATTACAAACTGCGCCCGGTGATGCTTCCCGGCGATCAACAAGGGGTACACGTCACCGCAGTGG
CGACCCTGGTCAGGTTGTTACGTCAGCGTGGTGAACGGATCGCCTTCCTCTATCTGGTGCCGAGTTTTCGCAATCCGAGT
GGTGTGACGCTAAGTGCTGAACGACGGGCTGAGCTGGCCCGTTTGGCTACTGCGCTCGAATTGACCGTTATTGAAGACGA
GGCGTATGCTGAATTGTGGTACGATTTGCCGCCACCGCCACCAATCGCCAGTTTTGCGCCTGGGAGCATGCTGATCCGAT
TAGGCAGTTTTGCCAAAGTATTGGCCCCTGGTCTACGGCTGGGTTGGATGCAGGCGCCGTCGTCGTTGATCCAGCGCTGT
GTCTCCTCTGGCATGCTCGATAGCGGAGGTGGGGTCAATCACTTTACCGCCCATGTTGTTCTCGCATTACTCCGTGCCGG
TGACTTTGAGCCGCACTTGCTGCGGTTACGTAATGGACTGCGGGCGCGACGCGATACGTTGCTGGCAGCGCTGGCCCGCA
CCATGCCGAGAGGTGTGACATGGCGGCCACCATTAGGCGGTTTTTTTGTCTGGTTGCGTACTCCGCCGACGATTGATACC
ACGGCCCTGCTGCCAATCGCAGAGGCGGCTGGTGTCTCGTATATTCCCGGTGAACGCTTTTACGCCGGTAGCGGTGGGCG
ACACGAGCTTCGCCTGGCGTTTTCGCTCCTCTCCGAAGCCGATTTGATCGAGGGTGCTCGCCGTTTGGGTAAGGTGTTAC
GAGAAGCGGGATGA

Upstream 100 bases:

>100_bases
GCTCAACAATATGATACCATTAGCGCTACACTCGTACCGTGAGAGCTTGCTTAGGAAAAGGTGCTCTCCGTATTGTAGCC
GTCTTTGAGGGTAACGATCT

Downstream 100 bases:

>100_bases
AGGCCGTTTCCTTCCTTGTAACCTCTGAAGATCATGGGCGTCCGCTAGGGGATATTGCCGCTGACCGACTGGGAGAAGCC
GGACGAGTGGCAGCACAGCG

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MLPDIQFVQRPGVIEFGWGHLAAELLPHTELLRAATWTLTNDAPAALTYGYAQGPGRLIALLAERIAIAEHELMITGGTS
QALDMLCKHLSQPGDVVLVEAPTYHLALRIFRDYKLRPVMLPGDQQGVHVTAVATLVRLLRQRGERIAFLYLVPSFRNPS
GVTLSAERRAELARLATALELTVIEDEAYAELWYDLPPPPPIASFAPGSMLIRLGSFAKVLAPGLRLGWMQAPSSLIQRC
VSSGMLDSGGGVNHFTAHVVLALLRAGDFEPHLLRLRNGLRARRDTLLAALARTMPRGVTWRPPLGGFFVWLRTPPTIDT
TALLPIAEAAGVSYIPGERFYAGSGGRHELRLAFSLLSEADLIEGARRLGKVLREAG

Sequences:

>Translated_377_residues
MLPDIQFVQRPGVIEFGWGHLAAELLPHTELLRAATWTLTNDAPAALTYGYAQGPGRLIALLAERIAIAEHELMITGGTS
QALDMLCKHLSQPGDVVLVEAPTYHLALRIFRDYKLRPVMLPGDQQGVHVTAVATLVRLLRQRGERIAFLYLVPSFRNPS
GVTLSAERRAELARLATALELTVIEDEAYAELWYDLPPPPPIASFAPGSMLIRLGSFAKVLAPGLRLGWMQAPSSLIQRC
VSSGMLDSGGGVNHFTAHVVLALLRAGDFEPHLLRLRNGLRARRDTLLAALARTMPRGVTWRPPLGGFFVWLRTPPTIDT
TALLPIAEAAGVSYIPGERFYAGSGGRHELRLAFSLLSEADLIEGARRLGKVLREAG
>Mature_377_residues
MLPDIQFVQRPGVIEFGWGHLAAELLPHTELLRAATWTLTNDAPAALTYGYAQGPGRLIALLAERIAIAEHELMITGGTS
QALDMLCKHLSQPGDVVLVEAPTYHLALRIFRDYKLRPVMLPGDQQGVHVTAVATLVRLLRQRGERIAFLYLVPSFRNPS
GVTLSAERRAELARLATALELTVIEDEAYAELWYDLPPPPPIASFAPGSMLIRLGSFAKVLAPGLRLGWMQAPSSLIQRC
VSSGMLDSGGGVNHFTAHVVLALLRAGDFEPHLLRLRNGLRARRDTLLAALARTMPRGVTWRPPLGGFFVWLRTPPTIDT
TALLPIAEAAGVSYIPGERFYAGSGGRHELRLAFSLLSEADLIEGARRLGKVLREAG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=25.705329153605, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=25.705329153605, Blast_Score=116, Evalue=4e-26,
Organism=Escherichia coli, GI1787710, Length=379, Percent_Identity=25.5936675461741, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790797, Length=310, Percent_Identity=23.5483870967742, Blast_Score=104, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6321000, Length=428, Percent_Identity=25.2336448598131, Blast_Score=110, Evalue=5e-25,
Organism=Drosophila melanogaster, GI21356535, Length=322, Percent_Identity=28.8819875776398, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 41129; Mature: 41129

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPDIQFVQRPGVIEFGWGHLAAELLPHTELLRAATWTLTNDAPAALTYGYAQGPGRLIA
CCCCCHHHCCCCEEEECHHHHHHHHCCHHHHHHHHHEEECCCCCCEEEECCCCCCHHHHH
LLAERIAIAEHELMITGGTSQALDMLCKHLSQPGDVVLVEAPTYHLALRIFRDYKLRPVM
HHHHHHHHHHCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEE
LPGDQQGVHVTAVATLVRLLRQRGERIAFLYLVPSFRNPSGVTLSAERRAELARLATALE
CCCCCCCEEHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHE
LTVIEDEAYAELWYDLPPPPPIASFAPGSMLIRLGSFAKVLAPGLRLGWMQAPSSLIQRC
EEEECCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHH
VSSGMLDSGGGVNHFTAHVVLALLRAGDFEPHLLRLRNGLRARRDTLLAALARTMPRGVT
HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
WRPPLGGFFVWLRTPPTIDTTALLPIAEAAGVSYIPGERFYAGSGGRHELRLAFSLLSEA
CCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHH
DLIEGARRLGKVLREAG
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLPDIQFVQRPGVIEFGWGHLAAELLPHTELLRAATWTLTNDAPAALTYGYAQGPGRLIA
CCCCCHHHCCCCEEEECHHHHHHHHCCHHHHHHHHHEEECCCCCCEEEECCCCCCHHHHH
LLAERIAIAEHELMITGGTSQALDMLCKHLSQPGDVVLVEAPTYHLALRIFRDYKLRPVM
HHHHHHHHHHCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEE
LPGDQQGVHVTAVATLVRLLRQRGERIAFLYLVPSFRNPSGVTLSAERRAELARLATALE
CCCCCCCEEHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHE
LTVIEDEAYAELWYDLPPPPPIASFAPGSMLIRLGSFAKVLAPGLRLGWMQAPSSLIQRC
EEEECCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHH
VSSGMLDSGGGVNHFTAHVVLALLRAGDFEPHLLRLRNGLRARRDTLLAALARTMPRGVT
HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
WRPPLGGFFVWLRTPPTIDTTALLPIAEAAGVSYIPGERFYAGSGGRHELRLAFSLLSEA
CCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHH
DLIEGARRLGKVLREAG
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]