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The map label for this gene is ugpB [H]

Identifier: 222524667

GI number: 222524667

Start: 1775336

End: 1776682

Strand: Direct

Name: ugpB [H]

Synonym: Chy400_1394

Alternate gene names: 222524667

Gene position: 1775336-1776682 (Clockwise)

Preceding gene: 222524666

Following gene: 222524668

Centisome position: 33.69

GC content: 58.8

Gene sequence:

>1347_bases
ATGAAACAGACACTCACCCGGCGCGAATTGTTGCGCCTGATGATGGCAGGTAGCGGTGCGGCGGTGCTGGCGGCGTGTGG
AGCACAAAGCGGACAATCAACCGGTCAGTCCCCCACTGCCCCGGCGGTTGTTAGCCAGCCCGGCTCGACGGTCAAGATCA
CGTATTGGGGATCGTTCAGCGGTAACCTGGGTGAAGCCGAGCAAGCGATGGTCAAGGCGTTCAACGACTCGCAAGACGAA
GTTGAAGTCGAGTATCAGTTCCAGGGCAGCTACGAAGAGACCGCGCAGAAGTTTACGGCGGCCTTGCAGGCCAACACCAC
CCCCGATGTCATCCTGCTCTCGGATGTGTGGTGGTTCGGTTTCTACCTTGCCGGTGCAATCACCGCCCTCGATGATCTCG
CCCGCCAGGTCAATCTCGACTTCAGCGATTACGAGCCGGTGTTGCTGAACGAAGGGGTACGCAAGGGTGTTCACTACTGG
ATTCCGTTTGCCCGCAGCACGCCACTCTTCTACTACAACAAAGACATTTGGGCCGAGGCCGGCCTACCCGACCGCGCACC
AGAAACCTGGGCCGAGTTTGCGGAATGGGCACCAAAACTGGTGAAGAGTGATGGGAGCCGGGCAGCCTTTGGTCACCCTA
ACGGCGCCAGCTATATCGCGTGGCTCTTCCAGGGTGTCGTCTGGCAGTTCGGCGGTCAGTATTCGCAACCCGATTTCACC
ATGACCATGACCGATCCCAACACCCTGCGCGCTGCTCAGTTCTACCAGGACACCGTGCTCAAAGAGAAGTGGGCAATCCT
CTCGCCCAATCTGAATCAGGACTTTATCGGTGGTGCGATTGCGTCGATGATGGCTTCAACCGGTGCTCTGGCCGGTATTC
AGGCGACTGCTACCTTCCCGGTTGGCGTCGGCTTCCTGCCCCGCGAGACCAACTTCGGGTGTCCGACAGGTGGTGCCGGC
CTGGCGATTGTCAGTCGCGCACCCGCCGAGAAGCAACTGGCCGCGATGAAGTACATCGCGTTTGCGACCAGTTCTACCAA
CGCCGGGATGTGGGCACGCAGCACTGGCTATATGCCGGTGCGCATCAGCACAAAGCAAACCCCGGAAATGGTTGAGTTCT
TCAATCAGAACCCGAATTTCAAGACCGCAGTCGATCAGTTGCCGAAGACCCGTGCCCAGGATGCGGCTCGCGTGTTCGTG
CGCAACGGCGATCAGATCATCGGCAAGGGCCTGGAGCGGATTATTGTCAATGGCGAAACACCAAGTGCCGTCTTCGCCGA
GGTTAACAATGAATTGACCCAGGCTGCGCAGCCAATTCTGGAAGACCTGAAAGCTGTTGAGGGCTAG

Upstream 100 bases:

>100_bases
TGAAGGGATGACTGCCGGTGCGGTGAAGGGTTGACCCTATTCCTGGTGCAATACGGTTTTGTGCCGTATGCAAATAGTTT
GATAGTAATGAGGAGCAATT

Downstream 100 bases:

>100_bases
GTCCTTTCGGTATCTGATCAGGAGCGTGAATCGGTCTGCTCTACAGGCCGGTTCACGCTCCAACGCCCGGCCTGGACGAG
AGGGCTGATACGGTAACGCA

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MKQTLTRRELLRLMMAGSGAAVLAACGAQSGQSTGQSPTAPAVVSQPGSTVKITYWGSFSGNLGEAEQAMVKAFNDSQDE
VEVEYQFQGSYEETAQKFTAALQANTTPDVILLSDVWWFGFYLAGAITALDDLARQVNLDFSDYEPVLLNEGVRKGVHYW
IPFARSTPLFYYNKDIWAEAGLPDRAPETWAEFAEWAPKLVKSDGSRAAFGHPNGASYIAWLFQGVVWQFGGQYSQPDFT
MTMTDPNTLRAAQFYQDTVLKEKWAILSPNLNQDFIGGAIASMMASTGALAGIQATATFPVGVGFLPRETNFGCPTGGAG
LAIVSRAPAEKQLAAMKYIAFATSSTNAGMWARSTGYMPVRISTKQTPEMVEFFNQNPNFKTAVDQLPKTRAQDAARVFV
RNGDQIIGKGLERIIVNGETPSAVFAEVNNELTQAAQPILEDLKAVEG

Sequences:

>Translated_448_residues
MKQTLTRRELLRLMMAGSGAAVLAACGAQSGQSTGQSPTAPAVVSQPGSTVKITYWGSFSGNLGEAEQAMVKAFNDSQDE
VEVEYQFQGSYEETAQKFTAALQANTTPDVILLSDVWWFGFYLAGAITALDDLARQVNLDFSDYEPVLLNEGVRKGVHYW
IPFARSTPLFYYNKDIWAEAGLPDRAPETWAEFAEWAPKLVKSDGSRAAFGHPNGASYIAWLFQGVVWQFGGQYSQPDFT
MTMTDPNTLRAAQFYQDTVLKEKWAILSPNLNQDFIGGAIASMMASTGALAGIQATATFPVGVGFLPRETNFGCPTGGAG
LAIVSRAPAEKQLAAMKYIAFATSSTNAGMWARSTGYMPVRISTKQTPEMVEFFNQNPNFKTAVDQLPKTRAQDAARVFV
RNGDQIIGKGLERIIVNGETPSAVFAEVNNELTQAAQPILEDLKAVEG
>Mature_448_residues
MKQTLTRRELLRLMMAGSGAAVLAACGAQSGQSTGQSPTAPAVVSQPGSTVKITYWGSFSGNLGEAEQAMVKAFNDSQDE
VEVEYQFQGSYEETAQKFTAALQANTTPDVILLSDVWWFGFYLAGAITALDDLARQVNLDFSDYEPVLLNEGVRKGVHYW
IPFARSTPLFYYNKDIWAEAGLPDRAPETWAEFAEWAPKLVKSDGSRAAFGHPNGASYIAWLFQGVVWQFGGQYSQPDFT
MTMTDPNTLRAAQFYQDTVLKEKWAILSPNLNQDFIGGAIASMMASTGALAGIQATATFPVGVGFLPRETNFGCPTGGAG
LAIVSRAPAEKQLAAMKYIAFATSSTNAGMWARSTGYMPVRISTKQTPEMVEFFNQNPNFKTAVDQLPKTRAQDAARVFV
RNGDQIIGKGLERIIVNGETPSAVFAEVNNELTQAAQPILEDLKAVEG

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=352, Percent_Identity=24.7159090909091, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48651; Mature: 48651

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQTLTRRELLRLMMAGSGAAVLAACGAQSGQSTGQSPTAPAVVSQPGSTVKITYWGSFS
CCCCHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCC
GNLGEAEQAMVKAFNDSQDEVEVEYQFQGSYEETAQKFTAALQANTTPDVILLSDVWWFG
CCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHH
FYLAGAITALDDLARQVNLDFSDYEPVLLNEGVRKGVHYWIPFARSTPLFYYNKDIWAEA
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCEECC
GLPDRAPETWAEFAEWAPKLVKSDGSRAAFGHPNGASYIAWLFQGVVWQFGGQYSQPDFT
CCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
MTMTDPNTLRAAQFYQDTVLKEKWAILSPNLNQDFIGGAIASMMASTGALAGIQATATFP
EEECCCCHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
VGVGFLPRETNFGCPTGGAGLAIVSRAPAEKQLAAMKYIAFATSSTNAGMWARSTGYMPV
CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHEEECCCCCCCEECCCCCEEE
RISTKQTPEMVEFFNQNPNFKTAVDQLPKTRAQDAARVFVRNGDQIIGKGLERIIVNGET
EECCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCCEEEECCCC
PSAVFAEVNNELTQAAQPILEDLKAVEG
CHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQTLTRRELLRLMMAGSGAAVLAACGAQSGQSTGQSPTAPAVVSQPGSTVKITYWGSFS
CCCCHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCC
GNLGEAEQAMVKAFNDSQDEVEVEYQFQGSYEETAQKFTAALQANTTPDVILLSDVWWFG
CCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHH
FYLAGAITALDDLARQVNLDFSDYEPVLLNEGVRKGVHYWIPFARSTPLFYYNKDIWAEA
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCEECC
GLPDRAPETWAEFAEWAPKLVKSDGSRAAFGHPNGASYIAWLFQGVVWQFGGQYSQPDFT
CCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
MTMTDPNTLRAAQFYQDTVLKEKWAILSPNLNQDFIGGAIASMMASTGALAGIQATATFP
EEECCCCHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
VGVGFLPRETNFGCPTGGAGLAIVSRAPAEKQLAAMKYIAFATSSTNAGMWARSTGYMPV
CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHEEECCCCCCCEECCCCCEEE
RISTKQTPEMVEFFNQNPNFKTAVDQLPKTRAQDAARVFVRNGDQIIGKGLERIIVNGET
EECCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCCEEEECCCC
PSAVFAEVNNELTQAAQPILEDLKAVEG
CHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA