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The map label for this gene is yggS [C]

Identifier: 222524290

GI number: 222524290

Start: 1290431

End: 1291171

Strand: Reverse

Name: yggS [C]

Synonym: Chy400_1013

Alternate gene names: 222524290

Gene position: 1291171-1290431 (Counterclockwise)

Preceding gene: 222524291

Following gene: 222524289

Centisome position: 24.51

GC content: 55.74

Gene sequence:

>741_bases
ATGACTGAGGCGCTTCGTCAACGACTGGCCATTGTCCGTGAGCAGATTGCAGCAGCCGCTGCCGCCGCCGGACGGCAAGC
TGACGAGGTACAGTTGATTGCGGTGAGTAAGACCCATCCACCGGAAGTGGTGGCAGCAGCGGTAGCCGCCGGCGTCAGCG
ATATTGGCGAAAATCGTGTGCAAGAAGCTCAACATAAAATCGCGGCGTTACACTCTCTGCAACCACGGCCGCGCTGGCAT
CTGATTGGCCATCTTCAGCGTAATAAGGCTAAAGTCGCGGTTGAATTGTTCGATCTCATCCATTCTGTTGATAGTGTACG
ACTGGCAGAAACGCTGGATCGGCATGCACGTGAGCGGGATCGGCGATTGCCGATTCTGCTCCAGGTGAATGTGAGTGGCG
AGGCGAGTAAAGAGGGTTTTGTGGTCGTGGATGGGATTAAAAATACGACAGCTTATAGCGCATTCTTGCGCGATGTAGAG
GCTATTCTGCAACTGCCGGCCCTTGAGATACGGGGGCTGATGACGATTGCGCCGATTGTTGAGCATCCCGATCTGGCGCG
GCCCTACTTCGCAACCTTACGTGAGCTACGTGATGATCTGGTCCGTCGCTATCCTCAGACCAACTGGCGCGAGCTTTCGA
TGGGTATGAGTGACGATCTCACGGCGGCGATTGCCGAAGGGGCAACGATGGTGCGGATCGGCAGAGCAATCTTCGGTGAG
CGAACAGGTAAGATGGTATGA

Upstream 100 bases:

>100_bases
TCCCATTACCGAACGGTCGCGGCTTGCTGTTGATCACCCATCTGCCGCCGGATCCACCGCTGGAGCAACGCTTACTTATC
GATGTGCAAGGGGCATCATC

Downstream 100 bases:

>100_bases
GAGCCAGGAATTATGACTATGAATGAATTGCCCGCCAATTTCACGATTCTGGCATTGGAAACCTCTTGTGACGAGACGGC
TGCTGCAGTGGTGCGTGGTG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTEALRQRLAIVREQIAAAAAAAGRQADEVQLIAVSKTHPPEVVAAAVAAGVSDIGENRVQEAQHKIAALHSLQPRPRWH
LIGHLQRNKAKVAVELFDLIHSVDSVRLAETLDRHARERDRRLPILLQVNVSGEASKEGFVVVDGIKNTTAYSAFLRDVE
AILQLPALEIRGLMTIAPIVEHPDLARPYFATLRELRDDLVRRYPQTNWRELSMGMSDDLTAAIAEGATMVRIGRAIFGE
RTGKMV

Sequences:

>Translated_246_residues
MTEALRQRLAIVREQIAAAAAAAGRQADEVQLIAVSKTHPPEVVAAAVAAGVSDIGENRVQEAQHKIAALHSLQPRPRWH
LIGHLQRNKAKVAVELFDLIHSVDSVRLAETLDRHARERDRRLPILLQVNVSGEASKEGFVVVDGIKNTTAYSAFLRDVE
AILQLPALEIRGLMTIAPIVEHPDLARPYFATLRELRDDLVRRYPQTNWRELSMGMSDDLTAAIAEGATMVRIGRAIFGE
RTGKMV
>Mature_245_residues
TEALRQRLAIVREQIAAAAAAAGRQADEVQLIAVSKTHPPEVVAAAVAAGVSDIGENRVQEAQHKIAALHSLQPRPRWHL
IGHLQRNKAKVAVELFDLIHSVDSVRLAETLDRHARERDRRLPILLQVNVSGEASKEGFVVVDGIKNTTAYSAFLRDVEA
ILQLPALEIRGLMTIAPIVEHPDLARPYFATLRELRDDLVRRYPQTNWRELSMGMSDDLTAAIAEGATMVRIGRAIFGER
TGKMV

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=246, Percent_Identity=37.8048780487805, Blast_Score=123, Evalue=1e-28,
Organism=Escherichia coli, GI1789321, Length=241, Percent_Identity=41.49377593361, Blast_Score=145, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17533025, Length=250, Percent_Identity=31.6, Blast_Score=100, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6319435, Length=249, Percent_Identity=33.7349397590361, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI45550861, Length=232, Percent_Identity=34.9137931034483, Blast_Score=111, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 27178; Mature: 27046

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEALRQRLAIVREQIAAAAAAAGRQADEVQLIAVSKTHPPEVVAAAVAAGVSDIGENRV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
QEAQHKIAALHSLQPRPRWHLIGHLQRNKAKVAVELFDLIHSVDSVRLAETLDRHARERD
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLPILLQVNVSGEASKEGFVVVDGIKNTTAYSAFLRDVEAILQLPALEIRGLMTIAPIV
CCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
EHPDLARPYFATLRELRDDLVRRYPQTNWRELSMGMSDDLTAAIAEGATMVRIGRAIFGE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHH
RTGKMV
HCCCCC
>Mature Secondary Structure 
TEALRQRLAIVREQIAAAAAAAGRQADEVQLIAVSKTHPPEVVAAAVAAGVSDIGENRV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
QEAQHKIAALHSLQPRPRWHLIGHLQRNKAKVAVELFDLIHSVDSVRLAETLDRHARERD
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLPILLQVNVSGEASKEGFVVVDGIKNTTAYSAFLRDVEAILQLPALEIRGLMTIAPIV
CCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
EHPDLARPYFATLRELRDDLVRRYPQTNWRELSMGMSDDLTAAIAEGATMVRIGRAIFGE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHH
RTGKMV
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]