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The map label for this gene is trbB [H]

Identifier: 222524266

GI number: 222524266

Start: 1264184

End: 1265389

Strand: Reverse

Name: trbB [H]

Synonym: Chy400_0989

Alternate gene names: 222524266

Gene position: 1265389-1264184 (Counterclockwise)

Preceding gene: 222524269

Following gene: 222524265

Centisome position: 24.02

GC content: 60.95

Gene sequence:

>1206_bases
ATGTACGCGAATTGGGATATTCCCGGTCAATCGGTACTCGGCGGGGAGGATGGGGCGACAGTTGCCGAGGAGCTGCGTAT
GTTGCTCCGCAGTGGTCGCTTGCGGGATTGCTGGCACGTTCCGCCTGAAGAAGCCTTTGCCCAACTTGGTCTGGGGAAGA
CGATCTGCTGGCGGCAGGTGGGCTGGTATGGCCCGCTGGAAATCTGGCGCGACCCGGAGCACGCGGTGTCGGACATTCTC
TTTAATGGCCCTGCCGACTCGCCCTTCTTTGTGGTGCAGCGGGGGATGATGGTCAATACCGGGGTGATGGTTCATCCGGC
CTGGATTGATTGGACACAGCGGCAGCTTGTCTGGCGTAGTCAGGGTATTGCGCCTGATCAGCCACTACCGCCGTTCGTGC
AGGGTGTCGTTGATGGGTTGCGTTACGCGATTACCAGTCGTAGTGCTTCCCCAGCCGGGCCGAGCCTTTCGATCCGGTTG
CTCCCTGAACGATGGGCAACGCTTGATGATCTGGTTCAAGGCCAGGTGATCACCCGTGAGGCGAGTGATCTTTTGTTAGC
TGCGTTGAACGGTGGGGCATCGCTGCTGATTGCCGGGCCAACGGGGAGTGGTAAAACGACGCTGGCGGCTGCGCTGACCC
AGGCGATTGGCAGGCATATGCGGCTGGTGGTGATCGAAGATGGCGGCGAATTACCGCGGAGCGCCAATAGTCTGCATATC
GAAGCTCCGCCGGAGCCGGGTGGTTTCGGTCGGGCAGTGACGTTTGCGCTGCGGCAGAAACCCAACTACATCATTGTCGG
CGAAGTGCGTGGTGGTGAAGCAATGGCGATGTTACAGGCCGCTGCCACCGGCCACCCTGGCCTGGGCACCATTCACGCCG
CTACCGTGCAAGGGGCGCTGCGCAATCTGGAGCGGATGGCCTTGATTGGTCTGGCTCAGGAAACGACCGGGGCCGGCCAG
GCGGCTGCGCAGATTGTACGCGGTCTGATTACGTCGGATGTTGTGAATTTGCTGGTTGTGCAGATTGGGCGAACGCCAAC
CGGTAAACGTGGGGTGGTTGCGATTGAGGAGGTGCTTCCCCAGGGTGCGCAGGGCCAGAGTGGCGATCCATTTCCGACCA
ATCCGCTCTTCCGTTACGAACGCAGCAGTGACCGTCTGATGCGGGCCGGGTATGTCAATGCCGGTTGGGGGCTTGGGCGA
ATGTGA

Upstream 100 bases:

>100_bases
TTGACGATACCCAGGCCGGCTACAAGCGCAGCGATGCTGTCGTCGGTCTGAAATGACATCAATAACCATTACCATCACAG
TCCAGTGGAGGGGACGTGGC

Downstream 100 bases:

>100_bases
TGGGGTTGCTTCAGATAGCCCTGGAGCGTTATCCGTTGCGGGTTTCCGGTGTATCAATGTGAACGGAGCTGTGCTATGGA
ACTGATCATCTTTAGTGCGA

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MYANWDIPGQSVLGGEDGATVAEELRMLLRSGRLRDCWHVPPEEAFAQLGLGKTICWRQVGWYGPLEIWRDPEHAVSDIL
FNGPADSPFFVVQRGMMVNTGVMVHPAWIDWTQRQLVWRSQGIAPDQPLPPFVQGVVDGLRYAITSRSASPAGPSLSIRL
LPERWATLDDLVQGQVITREASDLLLAALNGGASLLIAGPTGSGKTTLAAALTQAIGRHMRLVVIEDGGELPRSANSLHI
EAPPEPGGFGRAVTFALRQKPNYIIVGEVRGGEAMAMLQAAATGHPGLGTIHAATVQGALRNLERMALIGLAQETTGAGQ
AAAQIVRGLITSDVVNLLVVQIGRTPTGKRGVVAIEEVLPQGAQGQSGDPFPTNPLFRYERSSDRLMRAGYVNAGWGLGR
M

Sequences:

>Translated_401_residues
MYANWDIPGQSVLGGEDGATVAEELRMLLRSGRLRDCWHVPPEEAFAQLGLGKTICWRQVGWYGPLEIWRDPEHAVSDIL
FNGPADSPFFVVQRGMMVNTGVMVHPAWIDWTQRQLVWRSQGIAPDQPLPPFVQGVVDGLRYAITSRSASPAGPSLSIRL
LPERWATLDDLVQGQVITREASDLLLAALNGGASLLIAGPTGSGKTTLAAALTQAIGRHMRLVVIEDGGELPRSANSLHI
EAPPEPGGFGRAVTFALRQKPNYIIVGEVRGGEAMAMLQAAATGHPGLGTIHAATVQGALRNLERMALIGLAQETTGAGQ
AAAQIVRGLITSDVVNLLVVQIGRTPTGKRGVVAIEEVLPQGAQGQSGDPFPTNPLFRYERSSDRLMRAGYVNAGWGLGR
M
>Mature_401_residues
MYANWDIPGQSVLGGEDGATVAEELRMLLRSGRLRDCWHVPPEEAFAQLGLGKTICWRQVGWYGPLEIWRDPEHAVSDIL
FNGPADSPFFVVQRGMMVNTGVMVHPAWIDWTQRQLVWRSQGIAPDQPLPPFVQGVVDGLRYAITSRSASPAGPSLSIRL
LPERWATLDDLVQGQVITREASDLLLAALNGGASLLIAGPTGSGKTTLAAALTQAIGRHMRLVVIEDGGELPRSANSLHI
EAPPEPGGFGRAVTFALRQKPNYIIVGEVRGGEAMAMLQAAATGHPGLGTIHAATVQGALRNLERMALIGLAQETTGAGQ
AAAQIVRGLITSDVVNLLVVQIGRTPTGKRGVVAIEEVLPQGAQGQSGDPFPTNPLFRYERSSDRLMRAGYVNAGWGLGR
M

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=139, Percent_Identity=33.0935251798561, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI87082188, Length=192, Percent_Identity=30.7291666666667, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 42901; Mature: 42901

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYANWDIPGQSVLGGEDGATVAEELRMLLRSGRLRDCWHVPPEEAFAQLGLGKTICWRQV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHC
GWYGPLEIWRDPEHAVSDILFNGPADSPFFVVQRGMMVNTGVMVHPAWIDWTQRQLVWRS
CCCCCHHHCCCHHHHHHHHEECCCCCCCEEEEECCEEEECCEEEEEHHCCHHHHHHHHHH
QGIAPDQPLPPFVQGVVDGLRYAITSRSASPAGPSLSIRLLPERWATLDDLVQGQVITRE
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCHHHHHCCEEEEEC
ASDLLLAALNGGASLLIAGPTGSGKTTLAAALTQAIGRHMRLVVIEDGGELPRSANSLHI
HHHEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEE
EAPPEPGGFGRAVTFALRQKPNYIIVGEVRGGEAMAMLQAAATGHPGLGTIHAATVQGAL
ECCCCCCCCCHHEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
RNLERMALIGLAQETTGAGQAAAQIVRGLITSDVVNLLVVQIGRTPTGKRGVVAIEEVLP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHCC
QGAQGQSGDPFPTNPLFRYERSSDRLMRAGYVNAGWGLGRM
CCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MYANWDIPGQSVLGGEDGATVAEELRMLLRSGRLRDCWHVPPEEAFAQLGLGKTICWRQV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHC
GWYGPLEIWRDPEHAVSDILFNGPADSPFFVVQRGMMVNTGVMVHPAWIDWTQRQLVWRS
CCCCCHHHCCCHHHHHHHHEECCCCCCCEEEEECCEEEECCEEEEEHHCCHHHHHHHHHH
QGIAPDQPLPPFVQGVVDGLRYAITSRSASPAGPSLSIRLLPERWATLDDLVQGQVITRE
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCHHHHHCCEEEEEC
ASDLLLAALNGGASLLIAGPTGSGKTTLAAALTQAIGRHMRLVVIEDGGELPRSANSLHI
HHHEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEE
EAPPEPGGFGRAVTFALRQKPNYIIVGEVRGGEAMAMLQAAATGHPGLGTIHAATVQGAL
ECCCCCCCCCHHEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
RNLERMALIGLAQETTGAGQAAAQIVRGLITSDVVNLLVVQIGRTPTGKRGVVAIEEVLP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHCC
QGAQGQSGDPFPTNPLFRYERSSDRLMRAGYVNAGWGLGRM
CCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]