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The map label for this gene is yjcR [C]

Identifier: 222524169

GI number: 222524169

Start: 1116914

End: 1118413

Strand: Reverse

Name: yjcR [C]

Synonym: Chy400_0887

Alternate gene names: 222524169

Gene position: 1118413-1116914 (Counterclockwise)

Preceding gene: 222524170

Following gene: 222524168

Centisome position: 21.23

GC content: 62.6

Gene sequence:

>1500_bases
ATGCGCAAGTTTATCATTCCACTCCTTGCCGTGCTCTTGATAGCTGGTGGCGCATACGCTATCTTCGGGCCGAATGGTCC
GGGTGCGCAATCGGCACCGTCGCCGGTTCCGACGGGCGAACCGGTTGTCCCACCGCTGAGTGTCGAAGGGCGCGTCGTGC
CGGCGCAAGAGGCATGGTTGCGCTTTGAACGCAGTGGTATCGTCACCGCAATCCTGGTTGACGAAGGTGATACAGTGACG
GCGGGTCAGGCATTGATCCAGCTTGATGATCGACTTCAGCGCGCTGCCGTGCAACAAGCGGAAGCGAATCTGGCCCGCGC
CCAGGCCCGCTATGCATTGTTGCTGGCCGGGGCATCTGCCGAAGCACGAGCGGCTGCGGAAGCCGCTCTGCAGGTAGCCG
TCGCGCAGGCGACGCAGGTGGCGCTGGCGGTTGTCCCTGCCGATGAGCAGGCGATTGCAGCCCAACTCGCCGAAGCCCAG
GCCGCACGAACCAGGTTGCTGGCCGGGGCCGATCCCGATCTGATTGCGCAGGCGCAGGCAGTACGTGATCAGGCAGCGGC
GAATCTGGCTGCCCAGCAGAGTGCGCTGGCGGCGGCGAAGGTGAATGCGCAACTGGCAGTTGAGCAGGCGGCGAATGTGC
TCCGCGACCGCCAGGCCGACTACAGCCGAATCTACTGGGAAAACGAAGAACTACGCCAAAAGCTGGGTGAGGATGAACTT
CCCCAGGCCAGAATCGATGCAGAAGCGGCAGCATTACGTGCCGTACAGAACGCCGAGGTAGCGCTGGCCCAGGCCAGAGT
GGCCGCCGAACAGGCAGTGCAGGCCGAGAAAGAGGGGCTTGCCGCAGCCGAAGCCCGTCTACGTGAAGCAGAGGCGCGAC
TGGCTGCGCTCCTCAGCCCACCCGATGCCGATCAACTGGCGGCGATTGATGCCCGAATTGCGGCTGCCGAAGCCAGCCTG
GCCCGACTACGGGGCGATCCGCGGCAGGCGCAACTGGCTGTCGCCCAGGCCCAGGTTGCCCAGGCCCAGGCTCAGGTCGC
CCAAATCAATGCCGTACCGCGGGAGGAAGAACTGGCTATCGCCCAGGCCGAGATTGCCGCTGCCGAAGCTGCATTGGCCC
AGGCCAGGCTCGAACTCGCCAACATGGTATTGCGGGCACCGTTTGCAGGTGTCGTCTCGCGCATTGAACTGCATCCCGGC
GAGCTGGCATCACCTGCCACACCGGCTCTTCTGCTGGGCGATCTGCGCACATGGCATATCGAAACCACCGATCTCAGCGA
AATTGATGCAGCCCGGATCACGCCGGGGGCGGAAGTAACCATCACCTTTGATGCCTTACCCGGTGTGACGTTGCCGGGAC
GGGTACGCACCATCCAGCCCTACGGTGTCGAGCGTCTGGGTGAAATTGTGTATACTGCTCTTGTTGATTTACAGGCGTAT
GATCAGCGTTTACGCTGGAATATGACAGCAATCGTAACCTTGACCGACACAAATCGCTAA

Upstream 100 bases:

>100_bases
ACGATTGTGATGGTTACGCACGACAGCGATCTTGCCCGGCGGGCTGGTCGGGTGGTACTGGTATCAGATGGCCGGATTGT
GCATTGAAAGTGAGGCGATT

Downstream 100 bases:

>100_bases
GGTTGCATGGCTGTGCCCGGAGAGACACCATGGCCCCGCGTGATGAAGCCGAACTTCGGCGGCAGCAGATTATTGATGGT
GCGCTCAGAGCTTTCTCCCA

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: Multidrug Resistance Efflux Pump-Like Protein; RND Family Efflux Transporter MFP Subunit

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MRKFIIPLLAVLLIAGGAYAIFGPNGPGAQSAPSPVPTGEPVVPPLSVEGRVVPAQEAWLRFERSGIVTAILVDEGDTVT
AGQALIQLDDRLQRAAVQQAEANLARAQARYALLLAGASAEARAAAEAALQVAVAQATQVALAVVPADEQAIAAQLAEAQ
AARTRLLAGADPDLIAQAQAVRDQAAANLAAQQSALAAAKVNAQLAVEQAANVLRDRQADYSRIYWENEELRQKLGEDEL
PQARIDAEAAALRAVQNAEVALAQARVAAEQAVQAEKEGLAAAEARLREAEARLAALLSPPDADQLAAIDARIAAAEASL
ARLRGDPRQAQLAVAQAQVAQAQAQVAQINAVPREEELAIAQAEIAAAEAALAQARLELANMVLRAPFAGVVSRIELHPG
ELASPATPALLLGDLRTWHIETTDLSEIDAARITPGAEVTITFDALPGVTLPGRVRTIQPYGVERLGEIVYTALVDLQAY
DQRLRWNMTAIVTLTDTNR

Sequences:

>Translated_499_residues
MRKFIIPLLAVLLIAGGAYAIFGPNGPGAQSAPSPVPTGEPVVPPLSVEGRVVPAQEAWLRFERSGIVTAILVDEGDTVT
AGQALIQLDDRLQRAAVQQAEANLARAQARYALLLAGASAEARAAAEAALQVAVAQATQVALAVVPADEQAIAAQLAEAQ
AARTRLLAGADPDLIAQAQAVRDQAAANLAAQQSALAAAKVNAQLAVEQAANVLRDRQADYSRIYWENEELRQKLGEDEL
PQARIDAEAAALRAVQNAEVALAQARVAAEQAVQAEKEGLAAAEARLREAEARLAALLSPPDADQLAAIDARIAAAEASL
ARLRGDPRQAQLAVAQAQVAQAQAQVAQINAVPREEELAIAQAEIAAAEAALAQARLELANMVLRAPFAGVVSRIELHPG
ELASPATPALLLGDLRTWHIETTDLSEIDAARITPGAEVTITFDALPGVTLPGRVRTIQPYGVERLGEIVYTALVDLQAY
DQRLRWNMTAIVTLTDTNR
>Mature_499_residues
MRKFIIPLLAVLLIAGGAYAIFGPNGPGAQSAPSPVPTGEPVVPPLSVEGRVVPAQEAWLRFERSGIVTAILVDEGDTVT
AGQALIQLDDRLQRAAVQQAEANLARAQARYALLLAGASAEARAAAEAALQVAVAQATQVALAVVPADEQAIAAQLAEAQ
AARTRLLAGADPDLIAQAQAVRDQAAANLAAQQSALAAAKVNAQLAVEQAANVLRDRQADYSRIYWENEELRQKLGEDEL
PQARIDAEAAALRAVQNAEVALAQARVAAEQAVQAEKEGLAAAEARLREAEARLAALLSPPDADQLAAIDARIAAAEASL
ARLRGDPRQAQLAVAQAQVAQAQAQVAQINAVPREEELAIAQAEIAAAEAALAQARLELANMVLRAPFAGVVSRIELHPG
ELASPATPALLLGDLRTWHIETTDLSEIDAARITPGAEVTITFDALPGVTLPGRVRTIQPYGVERLGEIVYTALVDLQAY
DQRLRWNMTAIVTLTDTNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52430; Mature: 52430

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFIIPLLAVLLIAGGAYAIFGPNGPGAQSAPSPVPTGEPVVPPLSVEGRVVPAQEAWL
CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHH
RFERSGIVTAILVDEGDTVTAGQALIQLDDRLQRAAVQQAEANLARAQARYALLLAGASA
HHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
EARAAAEAALQVAVAQATQVALAVVPADEQAIAAQLAEAQAARTRLLAGADPDLIAQAQA
HHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VRDQAAANLAAQQSALAAAKVNAQLAVEQAANVLRDRQADYSRIYWENEELRQKLGEDEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCHHHHHHCCCCCC
PQARIDAEAAALRAVQNAEVALAQARVAAEQAVQAEKEGLAAAEARLREAEARLAALLSP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDADQLAAIDARIAAAEASLARLRGDPRQAQLAVAQAQVAQAQAQVAQINAVPREEELAI
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AQAEIAAAEAALAQARLELANMVLRAPFAGVVSRIELHPGELASPATPALLLGDLRTWHI
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHEEECCEEEEE
ETTDLSEIDAARITPGAEVTITFDALPGVTLPGRVRTIQPYGVERLGEIVYTALVDLQAY
ECCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
DQRLRWNMTAIVTLTDTNR
HHHHEECEEEEEEEECCCC
>Mature Secondary Structure
MRKFIIPLLAVLLIAGGAYAIFGPNGPGAQSAPSPVPTGEPVVPPLSVEGRVVPAQEAWL
CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHH
RFERSGIVTAILVDEGDTVTAGQALIQLDDRLQRAAVQQAEANLARAQARYALLLAGASA
HHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
EARAAAEAALQVAVAQATQVALAVVPADEQAIAAQLAEAQAARTRLLAGADPDLIAQAQA
HHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VRDQAAANLAAQQSALAAAKVNAQLAVEQAANVLRDRQADYSRIYWENEELRQKLGEDEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCHHHHHHCCCCCC
PQARIDAEAAALRAVQNAEVALAQARVAAEQAVQAEKEGLAAAEARLREAEARLAALLSP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDADQLAAIDARIAAAEASLARLRGDPRQAQLAVAQAQVAQAQAQVAQINAVPREEELAI
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AQAEIAAAEAALAQARLELANMVLRAPFAGVVSRIELHPGELASPATPALLLGDLRTWHI
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHEEECCEEEEE
ETTDLSEIDAARITPGAEVTITFDALPGVTLPGRVRTIQPYGVERLGEIVYTALVDLQAY
ECCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
DQRLRWNMTAIVTLTDTNR
HHHHEECEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA