| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222524119
Identifier: 222524119
GI number: 222524119
Start: 1049048
End: 1051204
Strand: Reverse
Name: 222524119
Synonym: Chy400_0835
Alternate gene names: NA
Gene position: 1051204-1049048 (Counterclockwise)
Preceding gene: 222524120
Following gene: 222524118
Centisome position: 19.95
GC content: 56.98
Gene sequence:
>2157_bases ATGTCTGATCTGAAACAACCTGATAGTGTCGGTGCAACGCCAACCAGTGACGAGATCGATCAGGAAAAGGTTCGCGAGTA TCTCGAACAGGAAGAGAAACCAACCCGGTCGTTGGGTCGCTTTTGGGGTATCGTTGTGACCCTGATTGCGGTCGGCATGG CCGGTTTTTATATCTACACCGCCGGTACGCTGCCGGCACCGGTGCAGTGGCAACGCGGAATCTATGTGATGTTGACCTAT ATTCTGGTGTTGCTGCTGTACCCCGCTGTTGGCAAGAAGAGTCCCTTGCAACCGTGGCTGTCCGGTCTGGCTGAGCGATT GCCGGGGCCGCTGCGCGCAGTGATTGTGCCACGCGGCGGGCCGACAATTCTCGATCTGGCGCTGATCGTCATCACGGTCA TCGTTGTTGGTTACTTCATCATTAACTATCCGGCATTGCAACGGCGGGCCGGCGCGTATAATCCGACCGATTTTACAGTG AGCGTCATCGGTCTGATCATCTCACTGGAGATTGCGCGCCGGGTATTGGGCTGGTCGATGACGCTGATCGGCCTCTTTTT CATTCTCTACCTGCGCTTCGGCTTTGTGCTGTACGACATTCCGATTCTTGACACCTTTGCCCATCGTGGCCAGCCCTGGC AACGGGTGGCAACGGTGCTCTTCCTCGATCAGGAAGGCGTATTCGGCGTCATGGCCAATGTGCTGGTCAGTTACGTTATT CTGTTCATCTTTTTCGGCGCATTTCTCAGTAAAGCCGGCGCCAGCCGTTTCTTCATCGATCTGCCGCTGGCCCTGGCCGG ACGAAGCACCGGCGGTCCGGCAAAAGTGGCAGTCTTGTCGTCGGCACTGTTTGGCTCGATTTCCGGGAGCGCAATTGCCA ACACCGTCAGTACCGGCACGTTCACCATTCCCTTGATGAAACGGGCCGGTTTTCGACCTCATGTGGCTGGGGCGATTGAG CCGTCGGCGTCGATTGGCGGTGCATTTATGCCGCCGGTGATGGGGGCGGGCGCGTTCTTGATGTCAGAGCTGACGAACAC GCCCTACTCGGTGATTGTGGCGATCTCAATTGTGCCGGCCATTCTCTACTTTCTGTCGGTATTGACGATGGTACATTTTG AGGCCAAGAAGTTCGGGTTAAGTGGGATCAAAACCGAACAGACGGCCTGGCAGATCATTCGGAACGAATGGTACCTCTCG CTGCCGCTGCTGGTCGTCATCTTTATGCTTGCACAAGGGTTTTCGCCCGGCTACGCCGCGTTCTGGTCGATTCTCTCGTG TATCCCCCTGATGTACCTGTTGCCGGAAAACCTGGCCGATTTCAAAAATCCGGCGGCACAGGGTGGGACGGTGGTGAACG CCTTTCTGCGCAGTACGGTTCGCGTGATCAAGACGATAAACGAGGCGATCCAGAAGGGTGTACGTGATACGCTGGTGATC GGCGCCACCGTTGGCGTGATCGGGATGATCGTCGGTACCATTTACGCGACCGGAGTAGGGCAACGGTTTGCCAACATCAT TGTCAGCCTGAGCGGTGGTAATCTGCTGATTGCGGTGCTGCTGATCGGCATCGCGTCACTCATTCTGGGCATGGGGGTAC CGGTAACCGCAGCTTACCTGATCACCGCTGTGATTGCCGTCCCAGCGTTGAATGATTTGGGGGTTGCGATCCTGGCGGCG CACATGATCGTCTACTGGTTTAGCCAGGATAGCAATATCACGCCGCCGGTCTGTGTGGCTGCTTATGCGGGTGCCGCGAT TGCCGGGGCCGATCCCTGGAAGACGGGGTGGACATCATTTAAATTTGCGAAATTGCTATACGTGATGCCGCTCCTCTTCG CCTTTACGCCAGAGATTCTGATGATTGGCGAAAGCGGTCAGCCGCTGGTCGATGTAGAATGGAGTAAGGTCGCGATGTCG TGGTTCTCGGCGACCCTCGGCACGATTGCCTTCTCGGCGGTTTCGATGTTCTATCTGGTGCGCAAGACGACGTGGTGGGA GTGGGTGATCGCCGCGTTTGGCACGTTCCTCTGTTTCTGGCCCAGCCTGCTGACGGATGCGATAGGCGTGCTGATCGTTG GCGGTGTCTGGTTCTGGCAGTGGTACGATGTGCGCCGACAGCGCCAGGCAGAGGTGCGGTCGAGTATGGCCGATTAG
Upstream 100 bases:
>100_bases AATTGAAGTAGGCTCTTTCATTGAACAGCAACGGGGCGGCTGAGCTGGAACCGGAGGGAGCAGTTTGCTCCCTCTGGTAC TACCACGTAAAGAGGCGCTT
Downstream 100 bases:
>100_bases AAGATCGGCTCACGGTTGCCACGATGATACAGGCAGGCTTGTGGGGCGGGTGAGACCTCTCTACACCTGATCATTGTGGT AACTGTACGAGGGTCTCCAC
Product: TRAP transporter, 4TM/12TM fusion protein
Products: NA
Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; Trap Family Transporter; TRAP-Type Transporter Permease Component; C4-Dicarboxylate Anaerobic Carrier; Permease; TRAP-Type Transport System Permease; TRAP-Type Transport System Permease Protein; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; TRAP Transporter Large Permease; TRAP Transport System Permease Component; TRAP-Type Transporter Fused Permeases; Trap Transporter; C4-Dicarboxylate Transporter; TRAP Type Transporter Protein; Inner Membrane Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; TRAP Transporter Permease; Integral Membrane Protein; Transcriptional Regulator DeoR Family; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP-Type Transport System Fused Permease Components; 4TM/12TM TRAP Transporter; TRAP Transporter Membrane-Spanning Component; TRAP-Type Transport System
Number of amino acids: Translated: 718; Mature: 717
Protein sequence:
>718_residues MSDLKQPDSVGATPTSDEIDQEKVREYLEQEEKPTRSLGRFWGIVVTLIAVGMAGFYIYTAGTLPAPVQWQRGIYVMLTY ILVLLLYPAVGKKSPLQPWLSGLAERLPGPLRAVIVPRGGPTILDLALIVITVIVVGYFIINYPALQRRAGAYNPTDFTV SVIGLIISLEIARRVLGWSMTLIGLFFILYLRFGFVLYDIPILDTFAHRGQPWQRVATVLFLDQEGVFGVMANVLVSYVI LFIFFGAFLSKAGASRFFIDLPLALAGRSTGGPAKVAVLSSALFGSISGSAIANTVSTGTFTIPLMKRAGFRPHVAGAIE PSASIGGAFMPPVMGAGAFLMSELTNTPYSVIVAISIVPAILYFLSVLTMVHFEAKKFGLSGIKTEQTAWQIIRNEWYLS LPLLVVIFMLAQGFSPGYAAFWSILSCIPLMYLLPENLADFKNPAAQGGTVVNAFLRSTVRVIKTINEAIQKGVRDTLVI GATVGVIGMIVGTIYATGVGQRFANIIVSLSGGNLLIAVLLIGIASLILGMGVPVTAAYLITAVIAVPALNDLGVAILAA HMIVYWFSQDSNITPPVCVAAYAGAAIAGADPWKTGWTSFKFAKLLYVMPLLFAFTPEILMIGESGQPLVDVEWSKVAMS WFSATLGTIAFSAVSMFYLVRKTTWWEWVIAAFGTFLCFWPSLLTDAIGVLIVGGVWFWQWYDVRRQRQAEVRSSMAD
Sequences:
>Translated_718_residues MSDLKQPDSVGATPTSDEIDQEKVREYLEQEEKPTRSLGRFWGIVVTLIAVGMAGFYIYTAGTLPAPVQWQRGIYVMLTY ILVLLLYPAVGKKSPLQPWLSGLAERLPGPLRAVIVPRGGPTILDLALIVITVIVVGYFIINYPALQRRAGAYNPTDFTV SVIGLIISLEIARRVLGWSMTLIGLFFILYLRFGFVLYDIPILDTFAHRGQPWQRVATVLFLDQEGVFGVMANVLVSYVI LFIFFGAFLSKAGASRFFIDLPLALAGRSTGGPAKVAVLSSALFGSISGSAIANTVSTGTFTIPLMKRAGFRPHVAGAIE PSASIGGAFMPPVMGAGAFLMSELTNTPYSVIVAISIVPAILYFLSVLTMVHFEAKKFGLSGIKTEQTAWQIIRNEWYLS LPLLVVIFMLAQGFSPGYAAFWSILSCIPLMYLLPENLADFKNPAAQGGTVVNAFLRSTVRVIKTINEAIQKGVRDTLVI GATVGVIGMIVGTIYATGVGQRFANIIVSLSGGNLLIAVLLIGIASLILGMGVPVTAAYLITAVIAVPALNDLGVAILAA HMIVYWFSQDSNITPPVCVAAYAGAAIAGADPWKTGWTSFKFAKLLYVMPLLFAFTPEILMIGESGQPLVDVEWSKVAMS WFSATLGTIAFSAVSMFYLVRKTTWWEWVIAAFGTFLCFWPSLLTDAIGVLIVGGVWFWQWYDVRRQRQAEVRSSMAD >Mature_717_residues SDLKQPDSVGATPTSDEIDQEKVREYLEQEEKPTRSLGRFWGIVVTLIAVGMAGFYIYTAGTLPAPVQWQRGIYVMLTYI LVLLLYPAVGKKSPLQPWLSGLAERLPGPLRAVIVPRGGPTILDLALIVITVIVVGYFIINYPALQRRAGAYNPTDFTVS VIGLIISLEIARRVLGWSMTLIGLFFILYLRFGFVLYDIPILDTFAHRGQPWQRVATVLFLDQEGVFGVMANVLVSYVIL FIFFGAFLSKAGASRFFIDLPLALAGRSTGGPAKVAVLSSALFGSISGSAIANTVSTGTFTIPLMKRAGFRPHVAGAIEP SASIGGAFMPPVMGAGAFLMSELTNTPYSVIVAISIVPAILYFLSVLTMVHFEAKKFGLSGIKTEQTAWQIIRNEWYLSL PLLVVIFMLAQGFSPGYAAFWSILSCIPLMYLLPENLADFKNPAAQGGTVVNAFLRSTVRVIKTINEAIQKGVRDTLVIG ATVGVIGMIVGTIYATGVGQRFANIIVSLSGGNLLIAVLLIGIASLILGMGVPVTAAYLITAVIAVPALNDLGVAILAAH MIVYWFSQDSNITPPVCVAAYAGAAIAGADPWKTGWTSFKFAKLLYVMPLLFAFTPEILMIGESGQPLVDVEWSKVAMSW FSATLGTIAFSAVSMFYLVRKTTWWEWVIAAFGTFLCFWPSLLTDAIGVLIVGGVWFWQWYDVRRQRQAEVRSSMAD
Specific function: Unknown
COG id: COG4666
COG function: function code R; TRAP-type uncharacterized transport system, fused permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77893; Mature: 77762
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLKQPDSVGATPTSDEIDQEKVREYLEQEEKPTRSLGRFWGIVVTLIAVGMAGFYIYT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEE AGTLPAPVQWQRGIYVMLTYILVLLLYPAVGKKSPLQPWLSGLAERLPGPLRAVIVPRGG CCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC PTILDLALIVITVIVVGYFIINYPALQRRAGAYNPTDFTVSVIGLIISLEIARRVLGWSM CHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TLIGLFFILYLRFGFVLYDIPILDTFAHRGQPWQRVATVLFLDQEGVFGVMANVLVSYVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCHHHHHHHHHHHHHH LFIFFGAFLSKAGASRFFIDLPLALAGRSTGGPAKVAVLSSALFGSISGSAIANTVSTGT HHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCE FTIPLMKRAGFRPHVAGAIEPSASIGGAFMPPVMGAGAFLMSELTNTPYSVIVAISIVPA EEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH ILYFLSVLTMVHFEAKKFGLSGIKTEQTAWQIIRNEWYLSLPLLVVIFMLAQGFSPGYAA HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHH FWSILSCIPLMYLLPENLADFKNPAAQGGTVVNAFLRSTVRVIKTINEAIQKGVRDTLVI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH GATVGVIGMIVGTIYATGVGQRFANIIVSLSGGNLLIAVLLIGIASLILGMGVPVTAAYL HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH ITAVIAVPALNDLGVAILAAHMIVYWFSQDSNITPPVCVAAYAGAAIAGADPWKTGWTSF HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHH KFAKLLYVMPLLFAFTPEILMIGESGQPLVDVEWSKVAMSWFSATLGTIAFSAVSMFYLV HHHHHHHHHHHHHHCCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKTTWWEWVIAAFGTFLCFWPSLLTDAIGVLIVGGVWFWQWYDVRRQRQAEVRSSMAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDLKQPDSVGATPTSDEIDQEKVREYLEQEEKPTRSLGRFWGIVVTLIAVGMAGFYIYT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEE AGTLPAPVQWQRGIYVMLTYILVLLLYPAVGKKSPLQPWLSGLAERLPGPLRAVIVPRGG CCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC PTILDLALIVITVIVVGYFIINYPALQRRAGAYNPTDFTVSVIGLIISLEIARRVLGWSM CHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TLIGLFFILYLRFGFVLYDIPILDTFAHRGQPWQRVATVLFLDQEGVFGVMANVLVSYVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCHHHHHHHHHHHHHH LFIFFGAFLSKAGASRFFIDLPLALAGRSTGGPAKVAVLSSALFGSISGSAIANTVSTGT HHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCE FTIPLMKRAGFRPHVAGAIEPSASIGGAFMPPVMGAGAFLMSELTNTPYSVIVAISIVPA EEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH ILYFLSVLTMVHFEAKKFGLSGIKTEQTAWQIIRNEWYLSLPLLVVIFMLAQGFSPGYAA HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHH FWSILSCIPLMYLLPENLADFKNPAAQGGTVVNAFLRSTVRVIKTINEAIQKGVRDTLVI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH GATVGVIGMIVGTIYATGVGQRFANIIVSLSGGNLLIAVLLIGIASLILGMGVPVTAAYL HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH ITAVIAVPALNDLGVAILAAHMIVYWFSQDSNITPPVCVAAYAGAAIAGADPWKTGWTSF HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHH KFAKLLYVMPLLFAFTPEILMIGESGQPLVDVEWSKVAMSWFSATLGTIAFSAVSMFYLV HHHHHHHHHHHHHHCCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKTTWWEWVIAAFGTFLCFWPSLLTDAIGVLIVGGVWFWQWYDVRRQRQAEVRSSMAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA