Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
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Accession | NC_012032 |
Length | 5,268,950 |
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The map label for this gene is 222523938
Identifier: 222523938
GI number: 222523938
Start: 799362
End: 802019
Strand: Direct
Name: 222523938
Synonym: Chy400_0652
Alternate gene names: NA
Gene position: 799362-802019 (Clockwise)
Preceding gene: 222523934
Following gene: 222523939
Centisome position: 15.17
GC content: 58.58
Gene sequence:
>2658_bases GTGTCTGCAACAGATGTTGCGTTGGACACCTGCACCACGTGTGGAGAGGCGTTAAGGTTATTGCGCCGTCGCGCTCGCCT GTCGCAACGCGAACTCTCGATCGCTACCGGCTACAGCGAATCGCACATTAGCCGCATCGAAAATAACGAACGTCCTCTCG ACCGTCATTCGCTGCTGGCGCTCTTTGTGCCGGCCTTACAACTCCAGGCGGAGCCGGAGACGGTGGCGCGTTGGCTAGCC CTTTGCACATCTACACCCTCGTCTCGGTCTGAGAGCGCCCGATCAACAGAGTCCACCTTTGCTGAGTCGCCTGCGTACTC ACCCACACCGGCGCTGCCGCTCCAACTTACCTCCTTTATTGGGCGTATCGAAGAGGTGTCAGAGGTGTGCACTCTCTTGC AGCGCCCAGATGTGCGCCTCCTCTCCTTCACTGGCATTGGCGGCTGTGGCAAAACCAGATTGGCGCTGCGTGTGGCGGAA ATGGTGGCACCTGGTTACGCACACGGCGTGCATTGGGTCGAGCTTGCGGCGTTGGAGCAGCCGCATGTGCTGCCACAACT TATGCTCGAACGCTGGCAATTACGTTGCGGCGCCACCGATCATCCGCTCGATGTATTGAGCAACTTTGTGAGTAACCGGC GCATGTTGCTTGTCCTGGATAATTGCGAACACCTTATAGAAGCGGTTGCGACTCTAGTGCTGAAGTTGTTGCAGCGATGC CCGTCACTGCAGATCCTGGCAACCAGCCGCGAGATTCTGTCTGTACCGGGTGAAGTTCATTACCACGTTCAGCCGCTGTC CCTTCCTCCAGTCTGGCGCAGCAGTTCCCCTTCCGCCACCGAGATCATGCGGTATGAAGCGATCCAACTCTTCGTAGCGC GCAGTCAGGCTGTCTTTCCCGCCTTTACTTTGACTGACACCAATGCGGCGGCAGTGGCCGCCATCTGCCAGCGGCTCGAC GGTATCCCGCTCGGAATCGAACTGGCGGCAGCGTGGATGTCCACCCTGGCGCCGCAGCAGCTTGCAGAGCATCTGCAAAT GGACTTCAGCTTGCTGGTGGATCAACGTCGCAGTGTATTGCCCCGCCACCAGACGTTGCGTGCCGCCATCGAATGGAGCT ATCGCCTCCTTACCGACCCCGAACGTACACTGTTGCGCTATCTGGCTGTCTTGCGCGGCACCTGGTCGCTGGCAATCGCA GAAGCAATTGCCGGCGAAGCGGGATTTAGCGCCACCCATCAACTGTTGTACATACTTAATCGCCTGGTCAGCAAGTCGCT CATTACGGTCGATCATCGGAACGAAGGTGAAGCGTGGTATCGACTGCTGGAGCCGCTACGCGAGTACCTTCTGACAATGC TAAGCGAGGAAGAAGAAGCCCGCATTCAGCAACATCGTCTGCGCTATTACGCGCATCTTGTAGAAACGGCGGAGGCGGGT TTATCCGGCGCTTTGCAACAATCGTGGTTGGATCGGATGGAGCGTGAACACGACAATTTACGCGCCGCCCTAAGTTGGGG CTGCGATCACGCCGGGGTACCAGCCCAACTTGCCGCGTTGCTGGCATCCCGCATCTGGCGCTTCTGGTTGGTGCGTGGCT ATTATTGCGAGGGGCGCCGCTGGCTAGAGGAAATGCTCACGCGTACTGCTCCATCCGGGCAGGTGCGCATCCGCCTGTTG TATGGCGCTGGCGTGCTCGCACGGCTCCAGCTCGATCTGGACGCTGCGGCTCGATTTGCCGGGGAGCAACTGCAACTGGC AGCAGAACTGAATGACCTGCGCGGCCTTGCCGATGGCTATGGGGTCATGGGATGGATCGAGGCGTTTCAAGGCAACCTGC AAGAGGCGACGCGATTCTTTGAGCAGCGACTGCTCATCTCCCGTCAACTCAACTATCAGCGTGGAATTGCCTATGCCTTG CGCGGCCTGGGCGAAAGCGCAACAGCACAAGCCAATTATCGAGAGGCAGGTGCTTATTTACAGGAAGCACTGAGCATCTT TACCGAATTGGGCGACCGTCGGTACATCGCGCAAATCTGGCGGGACTTTGGCCGTCTTGCTTACCACGAAGATGATCTGG AATCTGCCATCACAGCATTTCAGTCCAGCCTGGCAATCTATCAGGAGGTGGCTGATGCGCATAGTGTGGCCGAGTTGTTG CTCGATCTGTCTCGGCTTGCCCTTGCCAATCATGATTTGGCAGCCGCCGTTGCCCACCAGGCTGCCGCCGATCGCTTGAT CGAGGACACAATCGATCGCCAACTCCGTTGCGCATCTGACCTCAATCGTGCGCGAATCGCCCTCCACCAGCAAGATGTCC CGGCGGCCAGGGAGTATCTGAAAGAGGCGCTGCAGATTCTGGCGGTGCTTCATGATCGACCCGCCATGATAACGGGTATC GAACTGTCGGCTGCCGTTGCGCTGGCTATGCAAGAGCCGGTACACGCTCTCTGCCTGTGGAGTGCAGCCAGACGTTTTCG CCAGGGAAGCGGTCTGTGGGCACCTCGCTTCGAATCTCGCTGGACGCAACAGGAGATCGATACGCTTCGTCTGCGCATGC CGCCGGACGACTTCAGCGCTTTCTGGCAAATCGGTCAGGTATGGCCGCTAGAGCAGGCTGTAACTCAGGCACACATCCTC CTGGTTGGGCGATCCTGA
Upstream 100 bases:
>100_bases GCCTTTTTTGCCATTTCTTGCCAAAACGGCGAGGCAACGTGGTGTAAGGTGCGCTATAATCTGCACCATCACGGTTCTTG TTCGCGAAAGGATGTGTCCT
Downstream 100 bases:
>100_bases TCTGTACTCGGATCACGGATGACTTTGACTCACAACACGCCATTAAAGAACTACCCCCGAAAGCGAGGCAGGGTAGGGCG TATCGCACGGCACCGCTGGA
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 885; Mature: 884
Protein sequence:
>885_residues MSATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLALFVPALQLQAEPETVARWLA LCTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFIGRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAE MVAPGYAHGVHWVELAALEQPHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRC PSLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFPAFTLTDTNAAAVAAICQRLD GIPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVLPRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIA EAIAGEAGFSATHQLLYILNRLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAG LSGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRRWLEEMLTRTAPSGQVRIRLL YGAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGYGVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYAL RGLGESATAQANYREAGAYLQEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELL LDLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYLKEALQILAVLHDRPAMITGI ELSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESRWTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHIL LVGRS
Sequences:
>Translated_885_residues MSATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLALFVPALQLQAEPETVARWLA LCTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFIGRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAE MVAPGYAHGVHWVELAALEQPHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRC PSLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFPAFTLTDTNAAAVAAICQRLD GIPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVLPRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIA EAIAGEAGFSATHQLLYILNRLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAG LSGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRRWLEEMLTRTAPSGQVRIRLL YGAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGYGVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYAL RGLGESATAQANYREAGAYLQEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELL LDLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYLKEALQILAVLHDRPAMITGI ELSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESRWTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHIL LVGRS >Mature_884_residues SATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLALFVPALQLQAEPETVARWLAL CTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFIGRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAEM VAPGYAHGVHWVELAALEQPHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRCP SLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFPAFTLTDTNAAAVAAICQRLDG IPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVLPRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIAE AIAGEAGFSATHQLLYILNRLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAGL SGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRRWLEEMLTRTAPSGQVRIRLLY GAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGYGVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYALR GLGESATAQANYREAGAYLQEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELLL DLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYLKEALQILAVLHDRPAMITGIE LSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESRWTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHILL VGRS
Specific function: Unknown
COG id: COG3903
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR016032 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 99241; Mature: 99110
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHH LFVPALQLQAEPETVARWLALCTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFI HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH GRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAEMVAPGYAHGVHWVELAALEQ HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCC PHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRC CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHC PSLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFP CCCEEEECCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC AFTLTDTNAAAVAAICQRLDGIPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVL EEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC PRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIAEAIAGEAGFSATHQLLYILN CHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH RLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAG HHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LSGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH WLEEMLTRTAPSGQVRIRLLYGAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGY HHHHHHHCCCCCCCEEEEEEECCCEEEHEEECHHHHHHHCCHHHHHHHHHHHHHHHHCCC GVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYALRGLGESATAQANYREAGAYL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH QEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELL HHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH KEALQILAVLHDRPAMITGIELSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESR HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH WTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHILLVGRS CHHHHHHHEEEECCCCHHHHHHHHCCCCCHHHHHHHEEEEEEECC >Mature Secondary Structure SATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHH LFVPALQLQAEPETVARWLALCTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFI HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH GRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAEMVAPGYAHGVHWVELAALEQ HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCC PHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRC CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHC PSLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFP CCCEEEECCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC AFTLTDTNAAAVAAICQRLDGIPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVL EEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC PRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIAEAIAGEAGFSATHQLLYILN CHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH RLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAG HHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LSGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH WLEEMLTRTAPSGQVRIRLLYGAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGY HHHHHHHCCCCCCCEEEEEEECCCEEEHEEECHHHHHHHCCHHHHHHHHHHHHHHHHCCC GVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYALRGLGESATAQANYREAGAYL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH QEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELL HHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH KEALQILAVLHDRPAMITGIELSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESR HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH WTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHILLVGRS CHHHHHHHEEEECCCCHHHHHHHHCCCCCHHHHHHHEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]