Definition Chloroflexus sp. Y-400-fl chromosome, complete genome.
Accession NC_012032
Length 5,268,950

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The map label for this gene is 222523938

Identifier: 222523938

GI number: 222523938

Start: 799362

End: 802019

Strand: Direct

Name: 222523938

Synonym: Chy400_0652

Alternate gene names: NA

Gene position: 799362-802019 (Clockwise)

Preceding gene: 222523934

Following gene: 222523939

Centisome position: 15.17

GC content: 58.58

Gene sequence:

>2658_bases
GTGTCTGCAACAGATGTTGCGTTGGACACCTGCACCACGTGTGGAGAGGCGTTAAGGTTATTGCGCCGTCGCGCTCGCCT
GTCGCAACGCGAACTCTCGATCGCTACCGGCTACAGCGAATCGCACATTAGCCGCATCGAAAATAACGAACGTCCTCTCG
ACCGTCATTCGCTGCTGGCGCTCTTTGTGCCGGCCTTACAACTCCAGGCGGAGCCGGAGACGGTGGCGCGTTGGCTAGCC
CTTTGCACATCTACACCCTCGTCTCGGTCTGAGAGCGCCCGATCAACAGAGTCCACCTTTGCTGAGTCGCCTGCGTACTC
ACCCACACCGGCGCTGCCGCTCCAACTTACCTCCTTTATTGGGCGTATCGAAGAGGTGTCAGAGGTGTGCACTCTCTTGC
AGCGCCCAGATGTGCGCCTCCTCTCCTTCACTGGCATTGGCGGCTGTGGCAAAACCAGATTGGCGCTGCGTGTGGCGGAA
ATGGTGGCACCTGGTTACGCACACGGCGTGCATTGGGTCGAGCTTGCGGCGTTGGAGCAGCCGCATGTGCTGCCACAACT
TATGCTCGAACGCTGGCAATTACGTTGCGGCGCCACCGATCATCCGCTCGATGTATTGAGCAACTTTGTGAGTAACCGGC
GCATGTTGCTTGTCCTGGATAATTGCGAACACCTTATAGAAGCGGTTGCGACTCTAGTGCTGAAGTTGTTGCAGCGATGC
CCGTCACTGCAGATCCTGGCAACCAGCCGCGAGATTCTGTCTGTACCGGGTGAAGTTCATTACCACGTTCAGCCGCTGTC
CCTTCCTCCAGTCTGGCGCAGCAGTTCCCCTTCCGCCACCGAGATCATGCGGTATGAAGCGATCCAACTCTTCGTAGCGC
GCAGTCAGGCTGTCTTTCCCGCCTTTACTTTGACTGACACCAATGCGGCGGCAGTGGCCGCCATCTGCCAGCGGCTCGAC
GGTATCCCGCTCGGAATCGAACTGGCGGCAGCGTGGATGTCCACCCTGGCGCCGCAGCAGCTTGCAGAGCATCTGCAAAT
GGACTTCAGCTTGCTGGTGGATCAACGTCGCAGTGTATTGCCCCGCCACCAGACGTTGCGTGCCGCCATCGAATGGAGCT
ATCGCCTCCTTACCGACCCCGAACGTACACTGTTGCGCTATCTGGCTGTCTTGCGCGGCACCTGGTCGCTGGCAATCGCA
GAAGCAATTGCCGGCGAAGCGGGATTTAGCGCCACCCATCAACTGTTGTACATACTTAATCGCCTGGTCAGCAAGTCGCT
CATTACGGTCGATCATCGGAACGAAGGTGAAGCGTGGTATCGACTGCTGGAGCCGCTACGCGAGTACCTTCTGACAATGC
TAAGCGAGGAAGAAGAAGCCCGCATTCAGCAACATCGTCTGCGCTATTACGCGCATCTTGTAGAAACGGCGGAGGCGGGT
TTATCCGGCGCTTTGCAACAATCGTGGTTGGATCGGATGGAGCGTGAACACGACAATTTACGCGCCGCCCTAAGTTGGGG
CTGCGATCACGCCGGGGTACCAGCCCAACTTGCCGCGTTGCTGGCATCCCGCATCTGGCGCTTCTGGTTGGTGCGTGGCT
ATTATTGCGAGGGGCGCCGCTGGCTAGAGGAAATGCTCACGCGTACTGCTCCATCCGGGCAGGTGCGCATCCGCCTGTTG
TATGGCGCTGGCGTGCTCGCACGGCTCCAGCTCGATCTGGACGCTGCGGCTCGATTTGCCGGGGAGCAACTGCAACTGGC
AGCAGAACTGAATGACCTGCGCGGCCTTGCCGATGGCTATGGGGTCATGGGATGGATCGAGGCGTTTCAAGGCAACCTGC
AAGAGGCGACGCGATTCTTTGAGCAGCGACTGCTCATCTCCCGTCAACTCAACTATCAGCGTGGAATTGCCTATGCCTTG
CGCGGCCTGGGCGAAAGCGCAACAGCACAAGCCAATTATCGAGAGGCAGGTGCTTATTTACAGGAAGCACTGAGCATCTT
TACCGAATTGGGCGACCGTCGGTACATCGCGCAAATCTGGCGGGACTTTGGCCGTCTTGCTTACCACGAAGATGATCTGG
AATCTGCCATCACAGCATTTCAGTCCAGCCTGGCAATCTATCAGGAGGTGGCTGATGCGCATAGTGTGGCCGAGTTGTTG
CTCGATCTGTCTCGGCTTGCCCTTGCCAATCATGATTTGGCAGCCGCCGTTGCCCACCAGGCTGCCGCCGATCGCTTGAT
CGAGGACACAATCGATCGCCAACTCCGTTGCGCATCTGACCTCAATCGTGCGCGAATCGCCCTCCACCAGCAAGATGTCC
CGGCGGCCAGGGAGTATCTGAAAGAGGCGCTGCAGATTCTGGCGGTGCTTCATGATCGACCCGCCATGATAACGGGTATC
GAACTGTCGGCTGCCGTTGCGCTGGCTATGCAAGAGCCGGTACACGCTCTCTGCCTGTGGAGTGCAGCCAGACGTTTTCG
CCAGGGAAGCGGTCTGTGGGCACCTCGCTTCGAATCTCGCTGGACGCAACAGGAGATCGATACGCTTCGTCTGCGCATGC
CGCCGGACGACTTCAGCGCTTTCTGGCAAATCGGTCAGGTATGGCCGCTAGAGCAGGCTGTAACTCAGGCACACATCCTC
CTGGTTGGGCGATCCTGA

Upstream 100 bases:

>100_bases
GCCTTTTTTGCCATTTCTTGCCAAAACGGCGAGGCAACGTGGTGTAAGGTGCGCTATAATCTGCACCATCACGGTTCTTG
TTCGCGAAAGGATGTGTCCT

Downstream 100 bases:

>100_bases
TCTGTACTCGGATCACGGATGACTTTGACTCACAACACGCCATTAAAGAACTACCCCCGAAAGCGAGGCAGGGTAGGGCG
TATCGCACGGCACCGCTGGA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 885; Mature: 884

Protein sequence:

>885_residues
MSATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLALFVPALQLQAEPETVARWLA
LCTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFIGRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAE
MVAPGYAHGVHWVELAALEQPHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRC
PSLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFPAFTLTDTNAAAVAAICQRLD
GIPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVLPRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIA
EAIAGEAGFSATHQLLYILNRLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAG
LSGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRRWLEEMLTRTAPSGQVRIRLL
YGAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGYGVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYAL
RGLGESATAQANYREAGAYLQEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELL
LDLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYLKEALQILAVLHDRPAMITGI
ELSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESRWTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHIL
LVGRS

Sequences:

>Translated_885_residues
MSATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLALFVPALQLQAEPETVARWLA
LCTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFIGRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAE
MVAPGYAHGVHWVELAALEQPHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRC
PSLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFPAFTLTDTNAAAVAAICQRLD
GIPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVLPRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIA
EAIAGEAGFSATHQLLYILNRLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAG
LSGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRRWLEEMLTRTAPSGQVRIRLL
YGAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGYGVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYAL
RGLGESATAQANYREAGAYLQEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELL
LDLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYLKEALQILAVLHDRPAMITGI
ELSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESRWTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHIL
LVGRS
>Mature_884_residues
SATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLALFVPALQLQAEPETVARWLAL
CTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFIGRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAEM
VAPGYAHGVHWVELAALEQPHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRCP
SLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFPAFTLTDTNAAAVAAICQRLDG
IPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVLPRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIAE
AIAGEAGFSATHQLLYILNRLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAGL
SGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRRWLEEMLTRTAPSGQVRIRLLY
GAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGYGVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYALR
GLGESATAQANYREAGAYLQEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELLL
DLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYLKEALQILAVLHDRPAMITGIE
LSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESRWTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHILL
VGRS

Specific function: Unknown

COG id: COG3903

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000767
- InterPro:   IPR016032
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 99241; Mature: 99110

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHH
LFVPALQLQAEPETVARWLALCTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFI
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
GRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAEMVAPGYAHGVHWVELAALEQ
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCC
PHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRC
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
PSLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFP
CCCEEEECCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
AFTLTDTNAAAVAAICQRLDGIPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVL
EEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
PRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIAEAIAGEAGFSATHQLLYILN
CHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
RLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAG
HHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LSGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
WLEEMLTRTAPSGQVRIRLLYGAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGY
HHHHHHHCCCCCCCEEEEEEECCCEEEHEEECHHHHHHHCCHHHHHHHHHHHHHHHHCCC
GVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYALRGLGESATAQANYREAGAYL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
QEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELL
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KEALQILAVLHDRPAMITGIELSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESR
HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
WTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHILLVGRS
CHHHHHHHEEEECCCCHHHHHHHHCCCCCHHHHHHHEEEEEEECC
>Mature Secondary Structure 
SATDVALDTCTTCGEALRLLRRRARLSQRELSIATGYSESHISRIENNERPLDRHSLLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHH
LFVPALQLQAEPETVARWLALCTSTPSSRSESARSTESTFAESPAYSPTPALPLQLTSFI
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
GRIEEVSEVCTLLQRPDVRLLSFTGIGGCGKTRLALRVAEMVAPGYAHGVHWVELAALEQ
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCC
PHVLPQLMLERWQLRCGATDHPLDVLSNFVSNRRMLLVLDNCEHLIEAVATLVLKLLQRC
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
PSLQILATSREILSVPGEVHYHVQPLSLPPVWRSSSPSATEIMRYEAIQLFVARSQAVFP
CCCEEEECCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
AFTLTDTNAAAVAAICQRLDGIPLGIELAAAWMSTLAPQQLAEHLQMDFSLLVDQRRSVL
EEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
PRHQTLRAAIEWSYRLLTDPERTLLRYLAVLRGTWSLAIAEAIAGEAGFSATHQLLYILN
CHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
RLVSKSLITVDHRNEGEAWYRLLEPLREYLLTMLSEEEEARIQQHRLRYYAHLVETAEAG
HHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LSGALQQSWLDRMEREHDNLRAALSWGCDHAGVPAQLAALLASRIWRFWLVRGYYCEGRR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
WLEEMLTRTAPSGQVRIRLLYGAGVLARLQLDLDAAARFAGEQLQLAAELNDLRGLADGY
HHHHHHHCCCCCCCEEEEEEECCCEEEHEEECHHHHHHHCCHHHHHHHHHHHHHHHHCCC
GVMGWIEAFQGNLQEATRFFEQRLLISRQLNYQRGIAYALRGLGESATAQANYREAGAYL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
QEALSIFTELGDRRYIAQIWRDFGRLAYHEDDLESAITAFQSSLAIYQEVADAHSVAELL
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDLSRLALANHDLAAAVAHQAAADRLIEDTIDRQLRCASDLNRARIALHQQDVPAAREYL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KEALQILAVLHDRPAMITGIELSAAVALAMQEPVHALCLWSAARRFRQGSGLWAPRFESR
HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
WTQQEIDTLRLRMPPDDFSAFWQIGQVWPLEQAVTQAHILLVGRS
CHHHHHHHEEEECCCCHHHHHHHHCCCCCHHHHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]