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The map label for this gene is rtcB [H]

Identifier: 222523868

GI number: 222523868

Start: 686723

End: 688039

Strand: Reverse

Name: rtcB [H]

Synonym: Chy400_0576

Alternate gene names: 222523868

Gene position: 688039-686723 (Counterclockwise)

Preceding gene: 222523869

Following gene: 222523866

Centisome position: 13.06

GC content: 61.28

Gene sequence:

>1317_bases
ATGAAAGCAGCCCAGTTGTTAGCCGACTATACCAATCATCCGGCATTTCGTGAGTTGTGTCGGGCTGCTAAACAGATGCT
GCGTGAAGGGCTTGATCCGGCTACGGTGCGCCGGCAGATCGCTGCGCAGTATGGTGAGCCGCCGGTGGAGTTACGCCTGC
GCGCTCAGCCGCAGCCACTCAAGATTATCGGTGCCCATTTGATCGAGCCGGGTGCGATTGAACAGATGCAGACGGCGCTG
CGCTTGCCACCCGCGATTCGGGGAGCACTCATGCCCGATGCCCATCAGGGCTATGCGCTGCCGGTCGGTGGCGTGATCGC
GTATGACCGGGCGGTGGCGCCGTACCAGGTCGGTGTGGATATTGGCTGCCGGATGCATCTCTCGATCTTTGCTGATATGA
CCCCCGACGAGGCGCATCGTGATCGTCACCATCTGCTCGACACGCTTACGAAAGTCACGGTGTTTGGGATCGGCTCGCCG
AAGAAGCCGGTTGCCGACCATCCCATTCTCGCCGATCCGCGCTGGCGGGCAACAAAACTGCTCCGCGAACTGCACGATCT
GGCGACATATCAGATTGGCACATCCGGTGGTGGGAACCATTTTGCCGAGATTGTCGTCGGTGAGTGGCTTGATACGCACC
GCACGTTTGTTGGTTTGCTCACCCATAGCGGGAGTCGTGGTGTCGGTGCGAAGATCGCGAACTACTACGCAACCCTGGCC
GACCGGGAAACGGCGGTGATTGCCAGCGGCATTCCGAAGACATATGGCTGGCTGGGGACGGATACCGAAGCCGGGCAGGA
GTATCTGCTGGCCATGCGTTTGGCAGGCGATTTTGCCCGTGCCAATCACGAGGTCATCCATGCCCGCTTTGCCAGGGCGG
CAGGTGTTGCCGTGGAGCGGGTGATTGAGCACCACCACAATTTTGCCTGGGAGCAGCCCGACGGAACGGTTATTCACCGC
AAAGGCGCCACTCCTGCCGAGGCTGGTACCTATGGGTTGATCCCCGGTTCGATGGCAACCGCCAGCTACATTGTCGAAGG
GTTAGGCGAACCAACCTCGCTGGCCAGTGCATCGCACGGTGCCGGTCGGCGCTTCAGTCGTTCCGAAGCTCGCCGCACGA
TTACCCCGGCAATGGCAGCGGCAGTGGTGCGCGAGGCCGGTGTGCTGGTTCGCGGTCTGGCCGTCGATGAGTCGCCACTG
GCCTACAAGGATATCGAGACGGTGATGGAGTTGCAGGTTGCCGCCGGCCTCATTCGCCCCGTGGCCCGGATGCGTCCACT
GGTGGTGATAATGTCTGGCTCGGCAGGCGAGGATTAA

Upstream 100 bases:

>100_bases
TGACGCAGCCGCGGCGTGTTCGTTCCTCTATTTCGCCCTGTTTATGTCTGGTGCCGTGACCATACTGAGGCACAGGACGA
AATGAATTGAGGTGATACCT

Downstream 100 bases:

>100_bases
AAGCCGATATGCGTCATCAGCAACGCATATATCATTCGTTTGGCGTGCGGAAGCTCTGCTTCTGCACGCACCGTGCTTGA
TGCCGGGCGCGTGCTATACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MKAAQLLADYTNHPAFRELCRAAKQMLREGLDPATVRRQIAAQYGEPPVELRLRAQPQPLKIIGAHLIEPGAIEQMQTAL
RLPPAIRGALMPDAHQGYALPVGGVIAYDRAVAPYQVGVDIGCRMHLSIFADMTPDEAHRDRHHLLDTLTKVTVFGIGSP
KKPVADHPILADPRWRATKLLRELHDLATYQIGTSGGGNHFAEIVVGEWLDTHRTFVGLLTHSGSRGVGAKIANYYATLA
DRETAVIASGIPKTYGWLGTDTEAGQEYLLAMRLAGDFARANHEVIHARFARAAGVAVERVIEHHHNFAWEQPDGTVIHR
KGATPAEAGTYGLIPGSMATASYIVEGLGEPTSLASASHGAGRRFSRSEARRTITPAMAAAVVREAGVLVRGLAVDESPL
AYKDIETVMELQVAAGLIRPVARMRPLVVIMSGSAGED

Sequences:

>Translated_438_residues
MKAAQLLADYTNHPAFRELCRAAKQMLREGLDPATVRRQIAAQYGEPPVELRLRAQPQPLKIIGAHLIEPGAIEQMQTAL
RLPPAIRGALMPDAHQGYALPVGGVIAYDRAVAPYQVGVDIGCRMHLSIFADMTPDEAHRDRHHLLDTLTKVTVFGIGSP
KKPVADHPILADPRWRATKLLRELHDLATYQIGTSGGGNHFAEIVVGEWLDTHRTFVGLLTHSGSRGVGAKIANYYATLA
DRETAVIASGIPKTYGWLGTDTEAGQEYLLAMRLAGDFARANHEVIHARFARAAGVAVERVIEHHHNFAWEQPDGTVIHR
KGATPAEAGTYGLIPGSMATASYIVEGLGEPTSLASASHGAGRRFSRSEARRTITPAMAAAVVREAGVLVRGLAVDESPL
AYKDIETVMELQVAAGLIRPVARMRPLVVIMSGSAGED
>Mature_438_residues
MKAAQLLADYTNHPAFRELCRAAKQMLREGLDPATVRRQIAAQYGEPPVELRLRAQPQPLKIIGAHLIEPGAIEQMQTAL
RLPPAIRGALMPDAHQGYALPVGGVIAYDRAVAPYQVGVDIGCRMHLSIFADMTPDEAHRDRHHLLDTLTKVTVFGIGSP
KKPVADHPILADPRWRATKLLRELHDLATYQIGTSGGGNHFAEIVVGEWLDTHRTFVGLLTHSGSRGVGAKIANYYATLA
DRETAVIASGIPKTYGWLGTDTEAGQEYLLAMRLAGDFARANHEVIHARFARAAGVAVERVIEHHHNFAWEQPDGTVIHR
KGATPAEAGTYGLIPGSMATASYIVEGLGEPTSLASASHGAGRRFSRSEARRTITPAMAAAVVREAGVLVRGLAVDESPL
AYKDIETVMELQVAAGLIRPVARMRPLVVIMSGSAGED

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=446, Percent_Identity=26.9058295964126, Blast_Score=100, Evalue=3e-21,
Organism=Escherichia coli, GI2367224, Length=394, Percent_Identity=31.7258883248731, Blast_Score=159, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17506665, Length=446, Percent_Identity=26.2331838565022, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24585217, Length=444, Percent_Identity=27.2522522522523, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 47246; Mature: 47246

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAAQLLADYTNHPAFRELCRAAKQMLREGLDPATVRRQIAAQYGEPPVELRLRAQPQPL
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCH
KIIGAHLIEPGAIEQMQTALRLPPAIRGALMPDAHQGYALPVGGVIAYDRAVAPYQVGVD
HHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCEEECCCCCCCEEECCC
IGCRMHLSIFADMTPDEAHRDRHHLLDTLTKVTVFGIGSPKKPVADHPILADPRWRATKL
CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHH
LRELHDLATYQIGTSGGGNHFAEIVVGEWLDTHRTFVGLLTHSGSRGVGAKIANYYATLA
HHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
DRETAVIASGIPKTYGWLGTDTEAGQEYLLAMRLAGDFARANHEVIHARFARAAGVAVER
CCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VIEHHHNFAWEQPDGTVIHRKGATPAEAGTYGLIPGSMATASYIVEGLGEPTSLASASHG
HHHHHCCCCEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCC
AGRRFSRSEARRTITPAMAAAVVREAGVLVRGLAVDESPLAYKDIETVMELQVAAGLIRP
CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
VARMRPLVVIMSGSAGED
HHHCCCEEEEEECCCCCC
>Mature Secondary Structure
MKAAQLLADYTNHPAFRELCRAAKQMLREGLDPATVRRQIAAQYGEPPVELRLRAQPQPL
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCH
KIIGAHLIEPGAIEQMQTALRLPPAIRGALMPDAHQGYALPVGGVIAYDRAVAPYQVGVD
HHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCEEECCCCCCCEEECCC
IGCRMHLSIFADMTPDEAHRDRHHLLDTLTKVTVFGIGSPKKPVADHPILADPRWRATKL
CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHH
LRELHDLATYQIGTSGGGNHFAEIVVGEWLDTHRTFVGLLTHSGSRGVGAKIANYYATLA
HHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
DRETAVIASGIPKTYGWLGTDTEAGQEYLLAMRLAGDFARANHEVIHARFARAAGVAVER
CCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VIEHHHNFAWEQPDGTVIHRKGATPAEAGTYGLIPGSMATASYIVEGLGEPTSLASASHG
HHHHHCCCCEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCC
AGRRFSRSEARRTITPAMAAAVVREAGVLVRGLAVDESPLAYKDIETVMELQVAAGLIRP
CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
VARMRPLVVIMSGSAGED
HHHCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]