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The map label for this gene is yrkH [H]

Identifier: 222523534

GI number: 222523534

Start: 288267

End: 289448

Strand: Direct

Name: yrkH [H]

Synonym: Chy400_0240

Alternate gene names: 222523534

Gene position: 288267-289448 (Clockwise)

Preceding gene: 222523532

Following gene: 222523535

Centisome position: 5.47

GC content: 58.12

Gene sequence:

>1182_bases
ATGACATTCACACCAGAACAATCGACGGTTACTGAAATTTCTCCCCGCGATCTGTATGCCCGCTTGCTGAGTGCGCAACC
ACTCTTTATCCTCGACGTGCGCAACGAAGAGGAGTTTAAGCGAATGCCGGTTGAGGGTCACGCAACGCTGCGCACACTCA
ATCTGCCATATTTTGATTTCATCGAGGATGAAGAGGCTGCGCTGGCGCGCCTGCCAAAAGATGTTGAAGAGTTCATTGTC
ATTTGTGCCAAGGGCGGCGCTTCCCAGTACGTAGCCGAGGTGCTGAACAATCATGGTTATCGTGCCGTATCGCTCAGCGA
AGGCATGATCGGTTGGGGCAACTACTACGACGTCCGCGACGTGGTGAAGGCCGATTGGGGACGCATCGTTCAGATTGCCC
GACCTGCCCGTGGCGATCTCAGCTTTGCCGTGATCAGCGATGGTCAGGCGGCACTGGTTGATCCACTGCGCCACATTCAG
GTTTACCGCGAACTGATCGAGAACGCGGGTGCCCGATTAACTGCTATTCTCGACACCCACGTCCACGCCGATCACATCAG
TGGCGGCCCTGCGCTCAGCAAAGAGACCGGTGCTCCGTACTATATCCACCCCTACGATGCCATTCACCCCATCGACATGC
TGCCGGCTGTGATCGCCTACGAGCCACTCCGCGATGGGCAAACCTTCCAGATCGGTCAGGTACGTATCACCACCATCTGG
TATCCCGGCCACACCCTCGGTCAGGTGAACTTCCTCGCCGAGACGCCGGATGGCGGACGCTACCTTTTCACCGGCGACGG
AATCTTCCTGCGCTCGTTCGGGCGCCCCGACCTCGGTGGTAAGGGTGAAGCCTGGACCCCCATCCTCTACCGCAGCATGT
TCGAGTGGCTGCCCCGGCATCTGACCGACGACACCGTGATCCTGCCGGCCCACTTCAGCACGCTCGATGAAGACGCCGGT
AATGGTATCTTTGCCGCACCGTTTGCTCAAGTCCGTGCCCAAAACGACAGCCTGCAACCGCGGTCGCTCGAAGAGTTTAC
CAGCTACGTCCTGAGCCACCTGCCGGTCTTCCCACCAGAATACGTAGAAATCAAGCGCGTCAACATTGGCCTGGTCGAAG
CCTGTGAGGGCAAAGCCAGCGAGCTTGAGCTAGGCAAGAATATCTGTGCACTGGCCGGGTAA

Upstream 100 bases:

>100_bases
TAACAAAACCCTCGTAAGACTCTAACGCTGGCACGGTATGCTACAACTGAACAAAAAAAAGTATGTCGGTTCACGAAATT
GACGAAAGGGTAAGTAAGCA

Downstream 100 bases:

>100_bases
CGGTGTACAAAGGTATGAGTACTGGCGGCAGATCACGCTACTGCCGCCGAATATACAGTACAATACAAGGAAGGAGAATC
ATATGCCACACTTCGATCAA

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MTFTPEQSTVTEISPRDLYARLLSAQPLFILDVRNEEEFKRMPVEGHATLRTLNLPYFDFIEDEEAALARLPKDVEEFIV
ICAKGGASQYVAEVLNNHGYRAVSLSEGMIGWGNYYDVRDVVKADWGRIVQIARPARGDLSFAVISDGQAALVDPLRHIQ
VYRELIENAGARLTAILDTHVHADHISGGPALSKETGAPYYIHPYDAIHPIDMLPAVIAYEPLRDGQTFQIGQVRITTIW
YPGHTLGQVNFLAETPDGGRYLFTGDGIFLRSFGRPDLGGKGEAWTPILYRSMFEWLPRHLTDDTVILPAHFSTLDEDAG
NGIFAAPFAQVRAQNDSLQPRSLEEFTSYVLSHLPVFPPEYVEIKRVNIGLVEACEGKASELELGKNICALAG

Sequences:

>Translated_393_residues
MTFTPEQSTVTEISPRDLYARLLSAQPLFILDVRNEEEFKRMPVEGHATLRTLNLPYFDFIEDEEAALARLPKDVEEFIV
ICAKGGASQYVAEVLNNHGYRAVSLSEGMIGWGNYYDVRDVVKADWGRIVQIARPARGDLSFAVISDGQAALVDPLRHIQ
VYRELIENAGARLTAILDTHVHADHISGGPALSKETGAPYYIHPYDAIHPIDMLPAVIAYEPLRDGQTFQIGQVRITTIW
YPGHTLGQVNFLAETPDGGRYLFTGDGIFLRSFGRPDLGGKGEAWTPILYRSMFEWLPRHLTDDTVILPAHFSTLDEDAG
NGIFAAPFAQVRAQNDSLQPRSLEEFTSYVLSHLPVFPPEYVEIKRVNIGLVEACEGKASELELGKNICALAG
>Mature_392_residues
TFTPEQSTVTEISPRDLYARLLSAQPLFILDVRNEEEFKRMPVEGHATLRTLNLPYFDFIEDEEAALARLPKDVEEFIVI
CAKGGASQYVAEVLNNHGYRAVSLSEGMIGWGNYYDVRDVVKADWGRIVQIARPARGDLSFAVISDGQAALVDPLRHIQV
YRELIENAGARLTAILDTHVHADHISGGPALSKETGAPYYIHPYDAIHPIDMLPAVIAYEPLRDGQTFQIGQVRITTIWY
PGHTLGQVNFLAETPDGGRYLFTGDGIFLRSFGRPDLGGKGEAWTPILYRSMFEWLPRHLTDDTVILPAHFSTLDEDAGN
GIFAAPFAQVRAQNDSLQPRSLEEFTSYVLSHLPVFPPEYVEIKRVNIGLVEACEGKASELELGKNICALAG

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1787158, Length=180, Percent_Identity=30.5555555555556, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 43669; Mature: 43538

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTPEQSTVTEISPRDLYARLLSAQPLFILDVRNEEEFKRMPVEGHATLRTLNLPYFDF
CCCCCCCCCEEECCHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCEEEEECCCCCCC
IEDEEAALARLPKDVEEFIVICAKGGASQYVAEVLNNHGYRAVSLSEGMIGWGNYYDVRD
CCCCHHHHHHCCCCHHHHEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH
VVKADWGRIVQIARPARGDLSFAVISDGQAALVDPLRHIQVYRELIENAGARLTAILDTH
HHHHCCHHEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
VHADHISGGPALSKETGAPYYIHPYDAIHPIDMLPAVIAYEPLRDGQTFQIGQVRITTIW
EECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECEEEEEEEE
YPGHTLGQVNFLAETPDGGRYLFTGDGIFLRSFGRPDLGGKGEAWTPILYRSMFEWLPRH
ECCCCCCEEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
LTDDTVILPAHFSTLDEDAGNGIFAAPFAQVRAQNDSLQPRSLEEFTSYVLSHLPVFPPE
CCCCEEEEECCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
YVEIKRVNIGLVEACEGKASELELGKNICALAG
CEEEEEECCEEEECCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TFTPEQSTVTEISPRDLYARLLSAQPLFILDVRNEEEFKRMPVEGHATLRTLNLPYFDF
CCCCCCCCEEECCHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCEEEEECCCCCCC
IEDEEAALARLPKDVEEFIVICAKGGASQYVAEVLNNHGYRAVSLSEGMIGWGNYYDVRD
CCCCHHHHHHCCCCHHHHEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH
VVKADWGRIVQIARPARGDLSFAVISDGQAALVDPLRHIQVYRELIENAGARLTAILDTH
HHHHCCHHEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
VHADHISGGPALSKETGAPYYIHPYDAIHPIDMLPAVIAYEPLRDGQTFQIGQVRITTIW
EECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECEEEEEEEE
YPGHTLGQVNFLAETPDGGRYLFTGDGIFLRSFGRPDLGGKGEAWTPILYRSMFEWLPRH
ECCCCCCEEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
LTDDTVILPAHFSTLDEDAGNGIFAAPFAQVRAQNDSLQPRSLEEFTSYVLSHLPVFPPE
CCCCEEEEECCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
YVEIKRVNIGLVEACEGKASELELGKNICALAG
CEEEEEECCEEEECCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]