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The map label for this gene is rnpA

Identifier: 222523424

GI number: 222523424

Start: 157746

End: 158153

Strand: Direct

Name: rnpA

Synonym: Chy400_0127

Alternate gene names: 222523424

Gene position: 157746-158153 (Clockwise)

Preceding gene: 222523423

Following gene: 222523425

Centisome position: 2.99

GC content: 59.31

Gene sequence:

>408_bases
ATGCGACGTGCATATCGGCTACGCCGACCCGAACAGTTTCGTCGTGTGCGTCAGGAAGGACGCACATTCACCTCGCCGTG
GCTCATTCTCACCGTCGCACCGGCTCGACGACGTACCTTACGCTGCGGCTTCGTTGTCAGTCGCCGTGTCGGCGGCGCCG
TACAACGCAACCGTGCCCGCCGTCGTGTGCGCGAAGCTGTGCGCTTGCTGCTCCCACGACTGACAGCCGGTTACGATATG
GTGTTCACCATTCGCACACCAGAGGTGATTGACGCACCGTTCACACAATTGCAGGACGATATTACTGCGCTACTGCGGCA
GGCCTGTCTCCTGCCGGCACCCACGAATGAAACAGTGTCACCGGTTTCAGATACACCACTTCCACAACACGAACGAGGAT
CGCAATGA

Upstream 100 bases:

>100_bases
CCGCTAAGCGCAGAATGGGACGGGTTATCACCAACAGAACCGGGCAGCACGCTGGAGCAGCAGGTCATCTGTCGGCGATA
ACCCGTTTGTTTTCTTATCC

Downstream 100 bases:

>100_bases
ACATTTGGTCGGCATTTGTTGGATTGCTTGAACAACTCTTACTCTTCTTCTCGTCGTTGACCGGCAATATGGCGCTGGGC
ATTGTGCTCTTCACGATTGC

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MRRAYRLRRPEQFRRVRQEGRTFTSPWLILTVAPARRRTLRCGFVVSRRVGGAVQRNRARRRVREAVRLLLPRLTAGYDM
VFTIRTPEVIDAPFTQLQDDITALLRQACLLPAPTNETVSPVSDTPLPQHERGSQ

Sequences:

>Translated_135_residues
MRRAYRLRRPEQFRRVRQEGRTFTSPWLILTVAPARRRTLRCGFVVSRRVGGAVQRNRARRRVREAVRLLLPRLTAGYDM
VFTIRTPEVIDAPFTQLQDDITALLRQACLLPAPTNETVSPVSDTPLPQHERGSQ
>Mature_135_residues
MRRAYRLRRPEQFRRVRQEGRTFTSPWLILTVAPARRRTLRCGFVVSRRVGGAVQRNRARRRVREAVRLLLPRLTAGYDM
VFTIRTPEVIDAPFTQLQDDITALLRQACLLPAPTNETVSPVSDTPLPQHERGSQ

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_CHLAA (A9WBG7)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001633763.1
- GeneID:   5828044
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_0120
- HOGENOM:   HBG728160
- OMA:   CAEMERV
- ProtClustDB:   CLSK975085
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 15604; Mature: 15604

Theoretical pI: Translated: 12.30; Mature: 12.30

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRAYRLRRPEQFRRVRQEGRTFTSPWLILTVAPARRRTLRCGFVVSRRVGGAVQRNRAR
CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHH
RRVREAVRLLLPRLTAGYDMVFTIRTPEVIDAPFTQLQDDITALLRQACLLPAPTNETVS
HHHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PVSDTPLPQHERGSQ
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MRRAYRLRRPEQFRRVRQEGRTFTSPWLILTVAPARRRTLRCGFVVSRRVGGAVQRNRAR
CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHH
RRVREAVRLLLPRLTAGYDMVFTIRTPEVIDAPFTQLQDDITALLRQACLLPAPTNETVS
HHHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PVSDTPLPQHERGSQ
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA