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The map label for this gene is rfbU [H]

Identifier: 222523389

GI number: 222523389

Start: 107574

End: 108701

Strand: Direct

Name: rfbU [H]

Synonym: Chy400_0090

Alternate gene names: 222523389

Gene position: 107574-108701 (Clockwise)

Preceding gene: 222523386

Following gene: 222523390

Centisome position: 2.04

GC content: 60.64

Gene sequence:

>1128_bases
ATGCTACCACAGACCAGTATGATCGTTATTGACATCGATGCCAGTCGGGTCACGGTTGCCCAACGTACCGGCACGGAACG
GTACAGCTATGAACTGATTGCGGCGCTGGATCGCATTGCTCCGTCTGACATTCACTTTCGCCTGTATGTCAATGGTCGCC
GCGATCAGCTTCCCCCGGTAAGCGAACGCGCTACGATTCACGACATTCGCTTACCACGCCTTTGGACGCACCTGCGGCTT
GGCCCGACGAGCTGGCGCGCCCGGCCCCATGTTCTGTTCGTACCGGCGCACGTGGTGCCCTTGCTACATCCACCGACGGT
AGTGACAATTCACGATGTTGGGTACCGGGCATTTCCCGAAACGCACACCGCCCGCCGACGTCTTGAATTGGAGCTGACGA
CACGCTGGAGTCTGCGCGCTGCTCGTCACGTTATCACGATTTCGCACGCCACCAAACGCGACCTGATCAACTGGTACGGC
GCCGATCCCAATCGGATTACGGTGACGCATCTTGGGTGCAGCTCGATCTTTGCACCACCAGCCGACCCGCGTGTCGTGGC
AGCGGTCACAGCGCATTACGGTCTTGATCAACGTCCGTACCTGCTCTACATCGGCACCGTTCAACCGCGCAAAAACCTCA
GCCGGGTGATTGATGCCCTGGCTCTGACCATCGCTGCCGGCTACGACCTCGACCTGGTGATTGCCGGCAAGCGCGGCTGG
CTCAGCGAACCGATTGAGCGGCGCGCCGGCGAGCTGGGGATTGCCAATCGGGTGCATTTTACCGGCTTCGTGGCCGATGC
CGATCTCCCGGCGCTGCTGGCCGGTGCGCTGGCGTTTGTGTTTCCGTCGCTCTACGAAGGGTTCGGGATGCCGGTCGTCG
AAGCGATGGCCTGTGGGACACCGGTCATCACCAGTACCAGCTCGTCATTACCCGAAATCGCCGGAGATGCAGCGCTCCTG
GTTGATCCGCTCGACACCAATGCGATTGCGGCTGCTATCATGCGTCTGAGCGATGACCAAGATCTGCGAGCAACCCTGCG
CCAACGCGGTCTGGCACGGGCGCATCTGTTCAACTGGGAAACCTGTGCCCGGCAGACACTGGCAGTGCTGTTACAACAAT
CGCGGTAG

Upstream 100 bases:

>100_bases
TCGCCGAGCCATCCGAATAGGTGGTATGCATGTGGATCGCGCCCGGATAGATGAAAGGATAGTTCATGGTACACTCCATG
TACAAATATTCGCCCTCTGT

Downstream 100 bases:

>100_bases
CAGAGTTTGTATCAAATCTTGCCTGACACTGTGCATTATTCAGGTTGTCAGATCAGTATAGAAACGCCCGGTACGTTGTT
GCTGGCAGAGGTGTACTGTC

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MLPQTSMIVIDIDASRVTVAQRTGTERYSYELIAALDRIAPSDIHFRLYVNGRRDQLPPVSERATIHDIRLPRLWTHLRL
GPTSWRARPHVLFVPAHVVPLLHPPTVVTIHDVGYRAFPETHTARRRLELELTTRWSLRAARHVITISHATKRDLINWYG
ADPNRITVTHLGCSSIFAPPADPRVVAAVTAHYGLDQRPYLLYIGTVQPRKNLSRVIDALALTIAAGYDLDLVIAGKRGW
LSEPIERRAGELGIANRVHFTGFVADADLPALLAGALAFVFPSLYEGFGMPVVEAMACGTPVITSTSSSLPEIAGDAALL
VDPLDTNAIAAAIMRLSDDQDLRATLRQRGLARAHLFNWETCARQTLAVLLQQSR

Sequences:

>Translated_375_residues
MLPQTSMIVIDIDASRVTVAQRTGTERYSYELIAALDRIAPSDIHFRLYVNGRRDQLPPVSERATIHDIRLPRLWTHLRL
GPTSWRARPHVLFVPAHVVPLLHPPTVVTIHDVGYRAFPETHTARRRLELELTTRWSLRAARHVITISHATKRDLINWYG
ADPNRITVTHLGCSSIFAPPADPRVVAAVTAHYGLDQRPYLLYIGTVQPRKNLSRVIDALALTIAAGYDLDLVIAGKRGW
LSEPIERRAGELGIANRVHFTGFVADADLPALLAGALAFVFPSLYEGFGMPVVEAMACGTPVITSTSSSLPEIAGDAALL
VDPLDTNAIAAAIMRLSDDQDLRATLRQRGLARAHLFNWETCARQTLAVLLQQSR
>Mature_375_residues
MLPQTSMIVIDIDASRVTVAQRTGTERYSYELIAALDRIAPSDIHFRLYVNGRRDQLPPVSERATIHDIRLPRLWTHLRL
GPTSWRARPHVLFVPAHVVPLLHPPTVVTIHDVGYRAFPETHTARRRLELELTTRWSLRAARHVITISHATKRDLINWYG
ADPNRITVTHLGCSSIFAPPADPRVVAAVTAHYGLDQRPYLLYIGTVQPRKNLSRVIDALALTIAAGYDLDLVIAGKRGW
LSEPIERRAGELGIANRVHFTGFVADADLPALLAGALAFVFPSLYEGFGMPVVEAMACGTPVITSTSSSLPEIAGDAALL
VDPLDTNAIAAAIMRLSDDQDLRATLRQRGLARAHLFNWETCARQTLAVLLQQSR

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 41486; Mature: 41486

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPQTSMIVIDIDASRVTVAQRTGTERYSYELIAALDRIAPSDIHFRLYVNGRRDQLPPV
CCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
SERATIHDIRLPRLWTHLRLGPTSWRARPHVLFVPAHVVPLLHPPTVVTIHDVGYRAFPE
CCCCEEEEEECCHHHHHEEECCCCCCCCCCEEEECCCEEECCCCCCEEEEECCCCCCCCC
THTARRRLELELTTRWSLRAARHVITISHATKRDLINWYGADPNRITVTHLGCSSIFAPP
HHHHHEEEEEEEECCHHHHHHEEEEEEECCHHHHHHHHCCCCCCEEEEEEECCHHCCCCC
ADPRVVAAVTAHYGLDQRPYLLYIGTVQPRKNLSRVIDALALTIAAGYDLDLVIAGKRGW
CCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
LSEPIERRAGELGIANRVHFTGFVADADLPALLAGALAFVFPSLYEGFGMPVVEAMACGT
CCCHHHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
PVITSTSSSLPEIAGDAALLVDPLDTNAIAAAIMRLSDDQDLRATLRQRGLARAHLFNWE
CEEECCCCCCHHHCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCHH
TCARQTLAVLLQQSR
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MLPQTSMIVIDIDASRVTVAQRTGTERYSYELIAALDRIAPSDIHFRLYVNGRRDQLPPV
CCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
SERATIHDIRLPRLWTHLRLGPTSWRARPHVLFVPAHVVPLLHPPTVVTIHDVGYRAFPE
CCCCEEEEEECCHHHHHEEECCCCCCCCCCEEEECCCEEECCCCCCEEEEECCCCCCCCC
THTARRRLELELTTRWSLRAARHVITISHATKRDLINWYGADPNRITVTHLGCSSIFAPP
HHHHHEEEEEEEECCHHHHHHEEEEEEECCHHHHHHHHCCCCCCEEEEEEECCHHCCCCC
ADPRVVAAVTAHYGLDQRPYLLYIGTVQPRKNLSRVIDALALTIAAGYDLDLVIAGKRGW
CCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
LSEPIERRAGELGIANRVHFTGFVADADLPALLAGALAFVFPSLYEGFGMPVVEAMACGT
CCCHHHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
PVITSTSSSLPEIAGDAALLVDPLDTNAIAAAIMRLSDDQDLRATLRQRGLARAHLFNWE
CEEECCCCCCHHHCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCHH
TCARQTLAVLLQQSR
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]