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The map label for this gene is rbpA [H]

Identifier: 222523368

GI number: 222523368

Start: 76388

End: 76672

Strand: Reverse

Name: rbpA [H]

Synonym: Chy400_0069

Alternate gene names: 222523368

Gene position: 76672-76388 (Counterclockwise)

Preceding gene: 222523370

Following gene: 222523359

Centisome position: 1.46

GC content: 55.09

Gene sequence:

>285_bases
ATGTTGGTGAAACTGTTCGTCGGGAATTTGCCGTGGAATGTGGGCGACGCTGAGCTGGGTTCGATCTTCGAGCCGCATGG
TGAAGTGCAAAGCGCACGAGTGATCAATGATCGCGACACCGGTCGTTCGCGTGGTTTTGGCTTTGTCGAGATCGAAACAA
ATAACGTCGCTGCTGTCATCCGCGCAACCGACGGTCTTGAAGTTGGTGGTCGCAATTTGCGGGTGAATGAGGCCGAAGAT
AAGCCGCGCAATGCACCGCGTGGTGGCTTTGGTCGCCGCTATTAA

Upstream 100 bases:

>100_bases
GATGGGTTTCCATCGGCAGCGGTAGTACGAGAGTTCTGTGATAGCCGGTTTTGATATGCCACGCAGGTGTGTCAAACCAA
GTCTCTGTGGAGTGTGTACA

Downstream 100 bases:

>100_bases
AGCGTCACCCCTCATACTGTGATCAGGCCGGCAATCAATGGTGATTGCCGGCTTTGTGTTTTGTTAGTGGCTTGCGGTGT
GGTTATTCTGAGCGTGCACG

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MLVKLFVGNLPWNVGDAELGSIFEPHGEVQSARVINDRDTGRSRGFGFVEIETNNVAAVIRATDGLEVGGRNLRVNEAED
KPRNAPRGGFGRRY

Sequences:

>Translated_94_residues
MLVKLFVGNLPWNVGDAELGSIFEPHGEVQSARVINDRDTGRSRGFGFVEIETNNVAAVIRATDGLEVGGRNLRVNEAED
KPRNAPRGGFGRRY
>Mature_94_residues
MLVKLFVGNLPWNVGDAELGSIFEPHGEVQSARVINDRDTGRSRGFGFVEIETNNVAAVIRATDGLEVGGRNLRVNEAED
KPRNAPRGGFGRRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=86, Percent_Identity=38.3720930232558, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=42.8571428571429, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=38.4615384615385, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=81, Percent_Identity=41.9753086419753, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17137710, Length=75, Percent_Identity=40, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10311; Mature: 10311

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVKLFVGNLPWNVGDAELGSIFEPHGEVQSARVINDRDTGRSRGFGFVEIETNNVAAVI
CEEEEEECCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCCEEEEE
RATDGLEVGGRNLRVNEAEDKPRNAPRGGFGRRY
EECCCCEECCCEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLVKLFVGNLPWNVGDAELGSIFEPHGEVQSARVINDRDTGRSRGFGFVEIETNNVAAVI
CEEEEEECCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCCEEEEE
RATDGLEVGGRNLRVNEAEDKPRNAPRGGFGRRY
EECCCCEECCCEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]