Click here to switch to the map view.

The map label for this gene is ykgD [C]

Identifier: 222102892

GI number: 222102892

Start: 570675

End: 571589

Strand: Direct

Name: ykgD [C]

Synonym: Avi_7634

Alternate gene names: 222102892

Gene position: 570675-571589 (Clockwise)

Preceding gene: 222102887

Following gene: 222102893

Centisome position: 90.33

GC content: 56.5

Gene sequence:

>915_bases
ATGCTCGGACATTCCGTCGATAAATATGTGACCGGATCCATGCTGGAGACATCCAATGCCCACGGATGGACCAATATGCT
CGCCGAGCGCTGGAGCCATGCGCCGGGTGAACTGCCTTCGCTCGTGCCACGCGAAACCGAAATTGCCATCCTGCTACGCG
GTCGATCCGTGGTGGATCGTATCGGCGGCGGCATGCGCCAATACACCCAGGCGAGACCCGGCACGATCTGGCTCTGTCCT
GCAGGGATCGAGGAAGAGTTCATAAACGTCACCGAATCGATCGATGACTGTCTGCACATCTTTCTGTCCGGGCAGCCTTT
CGACGAGACAATCCTGCGCGAACACGATATTGATCCAGCCCGCGTGGAACTGCGCTACGAGAGCATCGCCAGCGACCCGT
TCATTGAATTCATAGCGACCGAGATCCTCAAGGAAATGGCGGAGGAGAGCCCTGCCGGGCGGTTGCTGATGGAAACCCTG
GCCATTTCCCTGTCTGCCCATCTCATCAAGCGGTATTCCGCAACCGACCTTCGTCCAAAACAGCCTTCAGCACAGGATCG
GCCGCTAGACCAGAAGCGCCTTTCGCGGGTCAAGGACTATATAGACGCGCATCTGGAAAATGATTTCACGGTTGTCGATC
TTGCCAGTATTGCCTGCATGAGCGTGGCGCACTTTGCCCGTAGTTTTAGGGCTGCAACCGGCAAGACTCCCCATAATTAT
GTGAGGGATTTGCGCCTCGAACTCGCAAAACAGCGCCTGACACGCGATGACAGCCATATCGCAGAGATCGCTTTTGCGGC
AGGCTTCTCGTCACAGGCCAATTTCACAAAGGCCTTTCGGAGCGCTACCGGCCTCACTCCGGCGAAGTTCCGCGTTATGA
CAGCCCTTCGAACACCGCAACGGAACAAAAATTAG

Upstream 100 bases:

>100_bases
GTTCCATTCCTGCGAAAACCCCCTCCTTGGATTCTGGCGCAAATCTTGCTTGTCTCTTGAGCCATATGTCGCGGCGCCAA
TCTGAAGGAGAGGCCAAGCC

Downstream 100 bases:

>100_bases
CCGCTCGTTCGTGAACGGGACAGATGCGCTTACAGGCTTTGGAATTGCTGACACCGCCAGCGAAATCAGACTTCATCGTT
GAGCGACAATTCAGATTTTG

Product: transcriptional regulator AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLGHSVDKYVTGSMLETSNAHGWTNMLAERWSHAPGELPSLVPRETEIAILLRGRSVVDRIGGGMRQYTQARPGTIWLCP
AGIEEEFINVTESIDDCLHIFLSGQPFDETILREHDIDPARVELRYESIASDPFIEFIATEILKEMAEESPAGRLLMETL
AISLSAHLIKRYSATDLRPKQPSAQDRPLDQKRLSRVKDYIDAHLENDFTVVDLASIACMSVAHFARSFRAATGKTPHNY
VRDLRLELAKQRLTRDDSHIAEIAFAAGFSSQANFTKAFRSATGLTPAKFRVMTALRTPQRNKN

Sequences:

>Translated_304_residues
MLGHSVDKYVTGSMLETSNAHGWTNMLAERWSHAPGELPSLVPRETEIAILLRGRSVVDRIGGGMRQYTQARPGTIWLCP
AGIEEEFINVTESIDDCLHIFLSGQPFDETILREHDIDPARVELRYESIASDPFIEFIATEILKEMAEESPAGRLLMETL
AISLSAHLIKRYSATDLRPKQPSAQDRPLDQKRLSRVKDYIDAHLENDFTVVDLASIACMSVAHFARSFRAATGKTPHNY
VRDLRLELAKQRLTRDDSHIAEIAFAAGFSSQANFTKAFRSATGLTPAKFRVMTALRTPQRNKN
>Mature_304_residues
MLGHSVDKYVTGSMLETSNAHGWTNMLAERWSHAPGELPSLVPRETEIAILLRGRSVVDRIGGGMRQYTQARPGTIWLCP
AGIEEEFINVTESIDDCLHIFLSGQPFDETILREHDIDPARVELRYESIASDPFIEFIATEILKEMAEESPAGRLLMETL
AISLSAHLIKRYSATDLRPKQPSAQDRPLDQKRLSRVKDYIDAHLENDFTVVDLASIACMSVAHFARSFRAATGKTPHNY
VRDLRLELAKQRLTRDDSHIAEIAFAAGFSSQANFTKAFRSATGLTPAKFRVMTALRTPQRNKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=99, Percent_Identity=39.3939393939394, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34094; Mature: 34094

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGHSVDKYVTGSMLETSNAHGWTNMLAERWSHAPGELPSLVPRETEIAILLRGRSVVDR
CCCCCHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHH
IGGGMRQYTQARPGTIWLCPAGIEEEFINVTESIDDCLHIFLSGQPFDETILREHDIDPA
HCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
RVELRYESIASDPFIEFIATEILKEMAEESPAGRLLMETLAISLSAHLIKRYSATDLRPK
HEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QPSAQDRPLDQKRLSRVKDYIDAHLENDFTVVDLASIACMSVAHFARSFRAATGKTPHNY
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VRDLRLELAKQRLTRDDSHIAEIAFAAGFSSQANFTKAFRSATGLTPAKFRVMTALRTPQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
RNKN
CCCC
>Mature Secondary Structure
MLGHSVDKYVTGSMLETSNAHGWTNMLAERWSHAPGELPSLVPRETEIAILLRGRSVVDR
CCCCCHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHH
IGGGMRQYTQARPGTIWLCPAGIEEEFINVTESIDDCLHIFLSGQPFDETILREHDIDPA
HCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
RVELRYESIASDPFIEFIATEILKEMAEESPAGRLLMETLAISLSAHLIKRYSATDLRPK
HEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QPSAQDRPLDQKRLSRVKDYIDAHLENDFTVVDLASIACMSVAHFARSFRAATGKTPHNY
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VRDLRLELAKQRLTRDDSHIAEIAFAAGFSSQANFTKAFRSATGLTPAKFRVMTALRTPQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
RNKN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]