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The map label for this gene is oppB [H]

Identifier: 222102432

GI number: 222102432

Start: 27595

End: 28518

Strand: Reverse

Name: oppB [H]

Synonym: Avi_7029

Alternate gene names: 222102432

Gene position: 28518-27595 (Counterclockwise)

Preceding gene: 222102433

Following gene: 222102431

Centisome position: 4.51

GC content: 55.95

Gene sequence:

>924_bases
ATGTTAGTTTACGTGTTAAGGCGTCTGGCGGTTGCCATACCGACGCTGCTGATCCTGATTATTACGTCCTTCCTGCTGAT
GAAAGCGGCGCCCGGTGGGCCATTCACAACAGAGAAGGCGCTAGCGCCGGAAATTCTGGCCAATCTCAATGCCAAGTACG
GGCTTGATGCGCCGCTGTGGCGGCAGCTTGTCACTTACGTCTGGGGCGTTGTTGTCCATTTCGATTTCGGGCCTTCCTTT
ATTTACAAGGACCGCACGGTCAATGAGATCATCGCGCAGGGCTTTCCCGTTACCCTGACCTATGGCTGCATCTCCTTTGT
GGTGGCTGTTTTGATTGGCGGTGCCCTCGGCATCTGTGCTGCCGTTTGGCACAATAGCTGGCTGGATTATCTGGCGGTTG
GGGTCGCCATCGGCACCCATGTGCTGCCAAGCTTTGTGCTGGCACCCATTCTGGTTCTGATCTTCACCCTTTGGCTTGGC
TGGTTGCCGGGCGGCGGCTGGGAGGGTGGGCAATGGCCCTATCTGATCATGCCGGTGATTTCACTCTCAGTCTTGTTCAT
TGCCTCCATCTCGCGGCTCACCCGCTCGTCTATGCTGGAAGTGCTGAATGCCAACCACATCCGCACTGCCCGCGCCAAGG
GCCTACCAGCACGGGTGGTGATTTTTCGCCACGCGCTCATTCCGGCGCTGCTGCCAGTGATTTCCTATCTCGGGCCTGCC
TTTGTCAGCATGATCACCGGATCTGTGGTGGTGGACATGTATTTTTCAACCGGCGGCATTGGCAAGTTTTTCGTCGATGC
GGCGCTGAACCGTGACTATGCCGTGATGATGGGCATAACCATTCTCATCGGCGGCCTGACAATTCTGTTCAACCTTGTGG
TCGATCTTCTCTATGCGTGGATTGATCCGAAAATCCGGTACTGA

Upstream 100 bases:

>100_bases
TGATGGGCAACTGGTACGCCAAAGACATGTACCGCGTGGCCAAATAATGCTGTAAAGGGCAGCACACCATGTGCTGCCCC
TCTTACCGGGGCGATCCAGA

Downstream 100 bases:

>100_bases
TGCGATGATGGTTGATAGAGCGCAGATGGAAAAGCTTGCGACACGAATGAGAGACGAGACCGTCAGAGGCCGCTCCCCAT
GGGCCGATGCAAGACGGCGC

Product: ABC transporter membrane spanning protein (oligopeptide)

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MLVYVLRRLAVAIPTLLILIITSFLLMKAAPGGPFTTEKALAPEILANLNAKYGLDAPLWRQLVTYVWGVVVHFDFGPSF
IYKDRTVNEIIAQGFPVTLTYGCISFVVAVLIGGALGICAAVWHNSWLDYLAVGVAIGTHVLPSFVLAPILVLIFTLWLG
WLPGGGWEGGQWPYLIMPVISLSVLFIASISRLTRSSMLEVLNANHIRTARAKGLPARVVIFRHALIPALLPVISYLGPA
FVSMITGSVVVDMYFSTGGIGKFFVDAALNRDYAVMMGITILIGGLTILFNLVVDLLYAWIDPKIRY

Sequences:

>Translated_307_residues
MLVYVLRRLAVAIPTLLILIITSFLLMKAAPGGPFTTEKALAPEILANLNAKYGLDAPLWRQLVTYVWGVVVHFDFGPSF
IYKDRTVNEIIAQGFPVTLTYGCISFVVAVLIGGALGICAAVWHNSWLDYLAVGVAIGTHVLPSFVLAPILVLIFTLWLG
WLPGGGWEGGQWPYLIMPVISLSVLFIASISRLTRSSMLEVLNANHIRTARAKGLPARVVIFRHALIPALLPVISYLGPA
FVSMITGSVVVDMYFSTGGIGKFFVDAALNRDYAVMMGITILIGGLTILFNLVVDLLYAWIDPKIRY
>Mature_307_residues
MLVYVLRRLAVAIPTLLILIITSFLLMKAAPGGPFTTEKALAPEILANLNAKYGLDAPLWRQLVTYVWGVVVHFDFGPSF
IYKDRTVNEIIAQGFPVTLTYGCISFVVAVLIGGALGICAAVWHNSWLDYLAVGVAIGTHVLPSFVLAPILVLIFTLWLG
WLPGGGWEGGQWPYLIMPVISLSVLFIASISRLTRSSMLEVLNANHIRTARAKGLPARVVIFRHALIPALLPVISYLGPA
FVSMITGSVVVDMYFSTGGIGKFFVDAALNRDYAVMMGITILIGGLTILFNLVVDLLYAWIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=307, Percent_Identity=55.0488599348534, Blast_Score=348, Evalue=2e-97,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=38.1877022653722, Blast_Score=191, Evalue=7e-50,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=34.8082595870207, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=35.048231511254, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=26.4462809917355, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787761, Length=315, Percent_Identity=34.6031746031746, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=31.1594202898551, Blast_Score=121, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33521; Mature: 33521

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVYVLRRLAVAIPTLLILIITSFLLMKAAPGGPFTTEKALAPEILANLNAKYGLDAPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
RQLVTYVWGVVVHFDFGPSFIYKDRTVNEIIAQGFPVTLTYGCISFVVAVLIGGALGICA
HHHHHHHHHHHHEECCCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVWHNSWLDYLAVGVAIGTHVLPSFVLAPILVLIFTLWLGWLPGGGWEGGQWPYLIMPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
SLSVLFIASISRLTRSSMLEVLNANHIRTARAKGLPARVVIFRHALIPALLPVISYLGPA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVSMITGSVVVDMYFSTGGIGKFFVDAALNRDYAVMMGITILIGGLTILFNLVVDLLYAW
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDPKIRY
HCCCCCC
>Mature Secondary Structure
MLVYVLRRLAVAIPTLLILIITSFLLMKAAPGGPFTTEKALAPEILANLNAKYGLDAPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
RQLVTYVWGVVVHFDFGPSFIYKDRTVNEIIAQGFPVTLTYGCISFVVAVLIGGALGICA
HHHHHHHHHHHHEECCCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVWHNSWLDYLAVGVAIGTHVLPSFVLAPILVLIFTLWLGWLPGGGWEGGQWPYLIMPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
SLSVLFIASISRLTRSSMLEVLNANHIRTARAKGLPARVVIFRHALIPALLPVISYLGPA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVSMITGSVVVDMYFSTGGIGKFFVDAALNRDYAVMMGITILIGGLTILFNLVVDLLYAW
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDPKIRY
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]