Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 222095413

GI number: 222095413

Start: 1721389

End: 1722282

Strand: Reverse

Name: rbcR [H]

Synonym: BCQ_1753

Alternate gene names: 222095413

Gene position: 1722282-1721389 (Counterclockwise)

Preceding gene: 222095419

Following gene: 222095409

Centisome position: 33.03

GC content: 32.44

Gene sequence:

>894_bases
ATGAATCTCTTAAAATTAGAAATTGTAGTGCTTATTAAGAAATACAAAAAGCTCACGATTGTTGCAGAACAGCTTGGTGT
TAAACAACCTACTATTACATTCCATATAAAAAGCTTAGAAGAGGAGCTCGGTGTACCTTTATTTGAATTACGTTCTGGAA
GATATTTCTTAACAGAGGCTGGCGAAGCATTGCATCATTATGCTTGTAAAATAGATGCGCTTATGAAAGAAGCTAGGCGA
GTCACGCAAGAGTTTAAAGATTTTCATAAAGGAGCTATAACAATTGGCGCTAGTTATGTACCAGCGACATATCTTTTACC
AGAAATTGTTCATCAATTTCAATGTGAATTTCCAAATATAAAAATAACACTCATGGTAAAAACAGCTCCTGAAATTCGAA
CGATGCTACAAAATCATGAAATTGATCTCGGTGTAATTTCAGCAGCACCGTTTGATGAATCACTTTTAAAACAGACGAAT
GTAATGCCTGATACACTTGTTCTTGCTTTCTCCAAAGAACATCATTTTTCAAAAAAAGAAAATGTATCATTACAAGATAT
CGAAAAGGAACGCATATTACTACATCGTAATCCATCTACAACGAGAGATTTACTTACAAAATGGATATTAGCTCATAACA
TTACATTCCAATCAGAAATTGAATTAGATTCATTAGAAACGATGAAACAAATTTTAAAATACGGTAATGGGGTTGCCTTT
ATTTCTAAACTTGCTATTGAACAAGAAGTACAACGAAATGAACTACGCTACATACCCATCCCTGAATTTGAATTTCAACG
TAACATTTATACGATTCATCATGAGGACAGGTGGAATTCTAAAATTATTTCTTTTTTACTACATAACATCACTTCTTATG
CAACAAAAAATTAA

Upstream 100 bases:

>100_bases
GAATGTTAATGTACTGTAAAGATTAAATTAAAAAACTTCTAATAAACTATTTATTTCTATAGATTTTTTCTATAGTTAGA
AGAAAAAGGGGCAACTTGCC

Downstream 100 bases:

>100_bases
AAGACTGTCGCTTTACACGACAGTCTTTTAAGCTATAACTCTATTTATTTTTCTTCGCTTCAATTTTTGCTTGCGCTTCT
TCAGCCTTATCTAATGCTTC

Product: transcriptional regulator, lysr family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNLLKLEIVVLIKKYKKLTIVAEQLGVKQPTITFHIKSLEEELGVPLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEIVHQFQCEFPNIKITLMVKTAPEIRTMLQNHEIDLGVISAAPFDESLLKQTN
VMPDTLVLAFSKEHHFSKKENVSLQDIEKERILLHRNPSTTRDLLTKWILAHNITFQSEIELDSLETMKQILKYGNGVAF
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLHNITSYATKN

Sequences:

>Translated_297_residues
MNLLKLEIVVLIKKYKKLTIVAEQLGVKQPTITFHIKSLEEELGVPLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEIVHQFQCEFPNIKITLMVKTAPEIRTMLQNHEIDLGVISAAPFDESLLKQTN
VMPDTLVLAFSKEHHFSKKENVSLQDIEKERILLHRNPSTTRDLLTKWILAHNITFQSEIELDSLETMKQILKYGNGVAF
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLHNITSYATKN
>Mature_297_residues
MNLLKLEIVVLIKKYKKLTIVAEQLGVKQPTITFHIKSLEEELGVPLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEIVHQFQCEFPNIKITLMVKTAPEIRTMLQNHEIDLGVISAAPFDESLLKQTN
VMPDTLVLAFSKEHHFSKKENVSLQDIEKERILLHRNPSTTRDLLTKWILAHNITFQSEIELDSLETMKQILKYGNGVAF
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLHNITSYATKN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=277, Percent_Identity=25.2707581227437, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790399, Length=273, Percent_Identity=23.8095238095238, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI157672245, Length=278, Percent_Identity=24.4604316546763, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=28.2258064516129, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082132, Length=264, Percent_Identity=24.2424242424242, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI145693105, Length=274, Percent_Identity=23.7226277372263, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=19.5121951219512, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=23.1023102310231, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789204, Length=248, Percent_Identity=20.5645161290323, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34441; Mature: 34441

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLKLEIVVLIKKYKKLTIVAEQLGVKQPTITFHIKSLEEELGVPLFELRSGRYFLTEA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHCCCHHHHCCCCEEEEHH
GEALHHYACKIDALMKEARRVTQEFKDFHKGAITIGASYVPATYLLPEIVHQFQCEFPNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCCCE
KITLMVKTAPEIRTMLQNHEIDLGVISAAPFDESLLKQTNVMPDTLVLAFSKEHHFSKKE
EEEEEEECCHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCCEEEEECCHHCCCCCC
NVSLQDIEKERILLHRNPSTTRDLLTKWILAHNITFQSEIELDSLETMKQILKYGNGVAF
CCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHH
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLHNITSYATKN
HHHHHHHHHHHHCCCEECCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLLKLEIVVLIKKYKKLTIVAEQLGVKQPTITFHIKSLEEELGVPLFELRSGRYFLTEA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHCCCHHHHCCCCEEEEHH
GEALHHYACKIDALMKEARRVTQEFKDFHKGAITIGASYVPATYLLPEIVHQFQCEFPNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCCCE
KITLMVKTAPEIRTMLQNHEIDLGVISAAPFDESLLKQTNVMPDTLVLAFSKEHHFSKKE
EEEEEEECCHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCCEEEEECCHHCCCCCC
NVSLQDIEKERILLHRNPSTTRDLLTKWILAHNITFQSEIELDSLETMKQILKYGNGVAF
CCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHH
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLHNITSYATKN
HHHHHHHHHHHHCCCEECCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA