Click here to switch to the map view.

The map label for this gene is rnhA [H]

Identifier: 222095315

GI number: 222095315

Start: 1637976

End: 1638362

Strand: Reverse

Name: rnhA [H]

Synonym: BCQ_1655

Alternate gene names: 222095315

Gene position: 1638362-1637976 (Counterclockwise)

Preceding gene: 222095316

Following gene: 222095314

Centisome position: 31.42

GC content: 36.95

Gene sequence:

>387_bases
TTGATTGAAGTATATATTGATGGTGCATCAAAAGGAAATCCTGGTCCTTCTGGTGCAGGCGTATTTATTAAAGGGGTTCA
ACCCGCTGTACAATTATCATTGCCCCTTGGGACAATGTCCAATCATGAAGCGGAATACCACGCTTTACTTGCGGCATTAA
AATATTGCACGGAGCATAATTATAACATTGTCTCTTTTCGTACAGATTCGCAACTTGTTGAGCGAGCTGTCGAAAAAGAA
TACGCAAAAAATAAAATGTTTGCACCACTATTAGAGGAAGCACTGCAGTACATAAAAAGTTTCGATCTCTTTTTTATTAA
GTGGATTCCAAGTAGTCAAAATAAAGTTGCTGATGAGTTAGCTAGAAAAGCTATCTTACAAAATTAA

Upstream 100 bases:

>100_bases
ACATGTCGTTATAGTATTACAATCGGCTAAGTTACTCTATCCCCTACTTCAAAGAAACATATAGGTAGGGGATCATCTTA
TCATTTGGAGGTTTCTCATT

Downstream 100 bases:

>100_bases
CGGGGGTATGAGTGTGAAAAAAGATTGGATTGCTCCTCTTGCTTTATTATTTGTGTCTTTTATTTGGGGAGCTACATTTG
TTGTCGTTCAAAATGCTATG

Product: ribonuclease h

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MIEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKE
YAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKAILQN

Sequences:

>Translated_128_residues
MIEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKE
YAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKAILQN
>Mature_128_residues
MIEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKE
YAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKAILQN

Specific function: Not known; does not have RNase H activity [H]

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00075 RnaseH [H]

EC number: 3.1.26.4

Molecular weight: Translated: 14278; Mature: 14278

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHN
CEEEEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
YNIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADEL
CEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
ARKAILQN
HHHHHCCC
>Mature Secondary Structure
MIEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHN
CEEEEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
YNIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADEL
CEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
ARKAILQN
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Sulfhydryl reagents [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Phosphoric ester hydrolysis [C]

Inhibitor: (NH4)2SO4; Dextran [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9888800 [H]