Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 222094430

GI number: 222094430

Start: 745568

End: 746686

Strand: Direct

Name: ydcM [C]

Synonym: BCQ_0744

Alternate gene names: 222094430

Gene position: 745568-746686 (Clockwise)

Preceding gene: 222094429

Following gene: 222094431

Centisome position: 14.3

GC content: 36.01

Gene sequence:

>1119_bases
ATGATCAATAAAGCGTATAAATTTCGTATCTATCCAAATAAAGCACAAGCGATCCTGATCAATAAAACGATTGGTTGTTC
TCGTTTTGTATTCAATCACTTCCTATCTCTATGGGATAATGCATACAAAGAAACAGGAAAAGGTTTGACATATGGTACAT
GCTCTGCCAAACTTCCTGCCATGAAGAAAGAGTTTGTTTGGCTAAAAGAAGTGGATAGTATTGCTATTCAATCGTCTGTT
CGCAACCTTGTGGATGCTTATACACGCTTTTTTAAAAAACAAAACAGTGCCCCGCGTTTCAAATCTAAAAAGAACAACGT
ACAATCTTATACCACAAAACAAACAAATGAAAACATTGCTGTTGTCGGAAACAAAATGAAATTGCCGAAACTAGGTCTTG
TTCGATTTGCCAAAAGTCGTGAAGTAAAGGGACGTATTTTAAATGCTACGGTTAGACGGAACCCTTCTGGCAGATACTTT
GTGTCATTGTTAGTTGAAACAGAAGTGCAAGAACTTCCGAAAACACATTCTTATATTGGAATGGATGTAGGATTAAAAGA
TTTCGCCATTTTGTCAGATGGAACAACCTATAAAAACCCTAAATTTTTTCGCTCATTGGAAGAGAAGTTGGCAAAAGCAC
AGCGCGTTCTTTCTAGAAGAATGAAAGGATCTTCTCGCTGGAATAAACAACGAGTAAGGGTAGCTAGAATTCATGAATAC
ATAGCTAATGCTAGAAAAGATTACTTGGACAAAATCTCAACTGAAATCATCAAAAACCACGATGTTATCGGTATAGAAGA
TTTGCAAGTATCGAATATGTTAAAAAATCATAAGTTAGCAAAAGCGATTAGTGAAGTATCTTGGTCACAATTTAGAACGT
TGCTAGAATACAAGGCAAAATGGTATGGAAAACAAGTCATTCTGGTATCCAAAACATTTGCTTCAAGCCAATTATGTTCT
TGTTGTGGGTATCAAAATAAAGACGTTAAGAATCTAAATCTTCGTGAATGGGATTGTCCTGAGTGCAATAGTCATCACGA
CAGAGATATTAACGCAAGTATCAATCTTAAAAATGAAGCTTTAAGGCTTCTAACCGTAGGAACTACGGGGATAGCCTAA

Upstream 100 bases:

>100_bases
GTAAAGTGTTACCGGATAATTTGTCATAATCACTTAACTAACTATCGAATGTGTGTTTGGTATATAATGGGAATATATCG
AAATGGAGGTGAAATGAAGG

Downstream 100 bases:

>100_bases
TGAATTAGAAGCCATTAGGCTTCTGTACTTAGGAATCTCCCACTTCAAACAGTCCGTAAGGACGTTAAGTGGTGAGTAGT
TCAATACTATACACATGGAG

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MINKAYKFRIYPNKAQAILINKTIGCSRFVFNHFLSLWDNAYKETGKGLTYGTCSAKLPAMKKEFVWLKEVDSIAIQSSV
RNLVDAYTRFFKKQNSAPRFKSKKNNVQSYTTKQTNENIAVVGNKMKLPKLGLVRFAKSREVKGRILNATVRRNPSGRYF
VSLLVETEVQELPKTHSYIGMDVGLKDFAILSDGTTYKNPKFFRSLEEKLAKAQRVLSRRMKGSSRWNKQRVRVARIHEY
IANARKDYLDKISTEIIKNHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTLLEYKAKWYGKQVILVSKTFASSQLCS
CCGYQNKDVKNLNLREWDCPECNSHHDRDINASINLKNEALRLLTVGTTGIA

Sequences:

>Translated_372_residues
MINKAYKFRIYPNKAQAILINKTIGCSRFVFNHFLSLWDNAYKETGKGLTYGTCSAKLPAMKKEFVWLKEVDSIAIQSSV
RNLVDAYTRFFKKQNSAPRFKSKKNNVQSYTTKQTNENIAVVGNKMKLPKLGLVRFAKSREVKGRILNATVRRNPSGRYF
VSLLVETEVQELPKTHSYIGMDVGLKDFAILSDGTTYKNPKFFRSLEEKLAKAQRVLSRRMKGSSRWNKQRVRVARIHEY
IANARKDYLDKISTEIIKNHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTLLEYKAKWYGKQVILVSKTFASSQLCS
CCGYQNKDVKNLNLREWDCPECNSHHDRDINASINLKNEALRLLTVGTTGIA
>Mature_372_residues
MINKAYKFRIYPNKAQAILINKTIGCSRFVFNHFLSLWDNAYKETGKGLTYGTCSAKLPAMKKEFVWLKEVDSIAIQSSV
RNLVDAYTRFFKKQNSAPRFKSKKNNVQSYTTKQTNENIAVVGNKMKLPKLGLVRFAKSREVKGRILNATVRRNPSGRYF
VSLLVETEVQELPKTHSYIGMDVGLKDFAILSDGTTYKNPKFFRSLEEKLAKAQRVLSRRMKGSSRWNKQRVRVARIHEY
IANARKDYLDKISTEIIKNHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTLLEYKAKWYGKQVILVSKTFASSQLCS
CCGYQNKDVKNLNLREWDCPECNSHHDRDINASINLKNEALRLLTVGTTGIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=366, Percent_Identity=34.4262295081967, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 42696; Mature: 42696

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKAYKFRIYPNKAQAILINKTIGCSRFVFNHFLSLWDNAYKETGKGLTYGTCSAKLPA
CCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
MKKEFVWLKEVDSIAIQSSVRNLVDAYTRFFKKQNSAPRFKSKKNNVQSYTTKQTNENIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCEE
VVGNKMKLPKLGLVRFAKSREVKGRILNATVRRNPSGRYFVSLLVETEVQELPKTHSYIG
EEECCCCCCCHHHHHHHHCCCCCCEEEEHEEEECCCCCEEEEEEEHHHHHHCCCHHCEEE
MDVGLKDFAILSDGTTYKNPKFFRSLEEKLAKAQRVLSRRMKGSSRWNKQRVRVARIHEY
ECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IANARKDYLDKISTEIIKNHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTLLEYKAK
HHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYGKQVILVSKTFASSQLCSCCGYQNKDVKNLNLREWDCPECNSHHDRDINASINLKNEA
HCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCE
LRLLTVGTTGIA
EEEEEECCCCCC
>Mature Secondary Structure
MINKAYKFRIYPNKAQAILINKTIGCSRFVFNHFLSLWDNAYKETGKGLTYGTCSAKLPA
CCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
MKKEFVWLKEVDSIAIQSSVRNLVDAYTRFFKKQNSAPRFKSKKNNVQSYTTKQTNENIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCEE
VVGNKMKLPKLGLVRFAKSREVKGRILNATVRRNPSGRYFVSLLVETEVQELPKTHSYIG
EEECCCCCCCHHHHHHHHCCCCCCEEEEHEEEECCCCCEEEEEEEHHHHHHCCCHHCEEE
MDVGLKDFAILSDGTTYKNPKFFRSLEEKLAKAQRVLSRRMKGSSRWNKQRVRVARIHEY
ECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IANARKDYLDKISTEIIKNHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTLLEYKAK
HHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYGKQVILVSKTFASSQLCSCCGYQNKDVKNLNLREWDCPECNSHHDRDINASINLKNEA
HCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCE
LRLLTVGTTGIA
EEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]