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The map label for this gene is yciR [C]

Identifier: 222094380

GI number: 222094380

Start: 691709

End: 693412

Strand: Direct

Name: yciR [C]

Synonym: BCQ_0694

Alternate gene names: 222094380

Gene position: 691709-693412 (Clockwise)

Preceding gene: 222094379

Following gene: 222094382

Centisome position: 13.27

GC content: 34.92

Gene sequence:

>1704_bases
ATGCTAGAACAAAGAGGTCATGCATTATATGAATCTTCATTGCGAGATTTAAAGTTAGCATTAGATGAGTCTTCAATTGT
TGCGATTACAGACCGAAAGGGTCTTATTACATATGTAAATGATAAGTTTTGTGAAATCTCCAAATATACACGAGAAGAGT
TAATAGGGAAAGATCATCGTATTTTAAATTCAGGACATCATCCGAAAACATTTTTTCAAATGCTATGGAAGCGTATTTTG
AGCGGAAAAGTATGGAGAGGGGAGATTCGAAATCAAGCAAAAGATGGTACATATTATTGGGTTAAAACAACAATTGTTCC
ATTTTTAAATGAAAAAGGAGAGCCATATCAATTTATTGCGATCCGAAATGATATTAGTAGTAGGAAAGAAGCAGAACAGA
GGTTGCGGTTAAGTGAAAGTCGTTATAGGGAGCTTGCGTATCATGATGCTTTAACGAGTTTACCGAACCGTTTACAATTA
ATAACGACTGTTAACGAATTGATTGCAGATAAAAAAGAGTTTGGTATGATTTATTTTGATTTGGATCGTTTTAAATTAGT
AAACGATACGCTAGGTCATATGATAGGAGATTTACTTTTAAGCGAAGTTGCTTCACGGTTGCATTATGTGCTAGGAGAGA
AAGATGTTCTGGCTAGGCTGGGTGGCGACGAATTTGTGTTGTTAACAAACAATCATACACAAGATGAGATGAGGCAGCTA
GCGACATCTGTATTGTCATGCTTTCAGGCACCATTTATGCTTGAAGGTCATGAAGTATACATTTCAGCTAGTCTAGGACT
GTGCTCATATCCTCAAGATGGACAAGATGTAGAAACCCTATTGAAGAATTCAGATTTAGCTATGTATAGTGCGAAAGAAC
AGGGAAGAAATGCAGCGTGTTTCTTTACAGATGAGTTACGTGCGAAAATAAATCGTAGAATGAAAATTGAATTTGCTTTG
CAAAAGGCAATTCGTGATGAAGAGTTAGATGTGGCACTGCAGCCTATTATTGATTTGAAAACGAAGAAATATACTGGTAT
TGAAGCTTTAGCGCGTTGTTCGACAGAAGAAGGACCTATTTCACCAGGCGAATTTATCCCAGTAGCTGAAGAATCTGGAC
TTATTATAAAATTAGGAGACTGGGTATTAGAAAAGTCATGTCGCTTGTTTAAAACATTGCCAGAGTATGAAGAAGGACTA
AAGTTATCTGTGAATTTATCCATACAACAATTAATGCAAAAGCGTTTTATTTTATCTGTACGTAGCATTTTAAGGAGAAC
TGGATTTCCCGCAAATCGTTTAATTTTAGAAATAACGGAAAGCATTGCTGTTCGTCATTTTGATTATATTATTGCTACAT
TACAAGAATTAAGAAATATGGGTATTTTAATTGCTTTAGATGATTTCGGAACGGGTTATTCTTCCTTATATTATTTAAAA
CAACTACCGCTGGATATAGTAAAAATTGATCGTAATTTTATTCGTGAATTTCATTATGATCATGCACAGCCAGAGCGAAC
GATTGTAAAATCTGTTATTGAAATTGCCCATAGCTTACATTTAGCAGTAGTTGCTGAAGGGGTAGAGACAGTAGAGCAAG
AAAGCTTATTAAAATCGATGGGCTGTGATTATGTACAAGGATTTTATTATGCAAAACCTTTATCTGTAGCAGAGTTAAAG
GAAAAGTTAATTATAGACTTCTAA

Upstream 100 bases:

>100_bases
GATGTATGTAAAGGATAATTATTAGGAAATGAAATATCTCTATTTCTATGAAAAGAAACAAGTTGTGTTTTAGTCAGATA
GGAAGCAAGGAGAGATGCGC

Downstream 100 bases:

>100_bases
TAAAAAAGAGAAGCCAGAAGCTTCTCCTTTTTTAATTCATTTTTTGTGAGTCTTTCATTAGTACAGGATAAAGAATAAGA
CCTAATACGAACAATCCGAT

Product: sensory box, ggdef family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHPKTFFQMLWKRIL
SGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEFAL
QKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEEGPISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGL
KLSVNLSIQQLMQKRFILSVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSVAELK
EKLIIDF

Sequences:

>Translated_567_residues
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHPKTFFQMLWKRIL
SGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEFAL
QKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEEGPISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGL
KLSVNLSIQQLMQKRFILSVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSVAELK
EKLIIDF
>Mature_567_residues
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHPKTFFQMLWKRIL
SGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEFAL
QKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEEGPISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGL
KLSVNLSIQQLMQKRFILSVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSVAELK
EKLIIDF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=35.8620689655172, Blast_Score=288, Evalue=7e-79,
Organism=Escherichia coli, GI87081921, Length=495, Percent_Identity=31.9191919191919, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=29.3144208037825, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=36.8200836820084, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787055, Length=447, Percent_Identity=26.1744966442953, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081845, Length=268, Percent_Identity=34.3283582089552, Blast_Score=138, Evalue=8e-34,
Organism=Escherichia coli, GI1788849, Length=427, Percent_Identity=27.8688524590164, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081743, Length=276, Percent_Identity=34.0579710144928, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1788502, Length=264, Percent_Identity=32.1969696969697, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=30.672268907563, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=31.5384615384615, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=26.603325415677, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788381, Length=342, Percent_Identity=28.9473684210526, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=32.3353293413174, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=35.2201257861635, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789453, Length=101, Percent_Identity=33.6633663366337, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=32.5443786982249, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787410, Length=236, Percent_Identity=27.9661016949153, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=31.5217391304348, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789650, Length=448, Percent_Identity=20.9821428571429, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI145693134, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=28.2208588957055, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=26.1363636363636, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787802, Length=127, Percent_Identity=29.1338582677165, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65044; Mature: 65044

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHR
CCCCCCCHHHHHHHHHHHHEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCHH
ILNSGHHPKTFFQMLWKRILSGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIA
HHCCCCCHHHHHHHHHHHHHCCCCEEHHHHCCCCCCEEEEEEEEHHHHHCCCCCCEEEEE
IRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFD
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCEEEEE
LDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCHHHHHHH
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC
HHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHCCCCEEE
FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEEGPI
EEHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
SPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGLKLSVNLSIQQLMQKRFILSV
CCCCEEEEECCCCEEEEECHHHHHHHHHHHHHCHHHHCCCEEEEECHHHHHHHHHHHHHH
RSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLLKSM
HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GCDYVQGFYYAKPLSVAELKEKLIIDF
CCHHHHCCHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHR
CCCCCCCHHHHHHHHHHHHEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCHH
ILNSGHHPKTFFQMLWKRILSGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIA
HHCCCCCHHHHHHHHHHHHHCCCCEEHHHHCCCCCCEEEEEEEEHHHHHCCCCCCEEEEE
IRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFD
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCEEEEE
LDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCHHHHHHH
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC
HHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHCCCCEEE
FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEEGPI
EEHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
SPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPEYEEGLKLSVNLSIQQLMQKRFILSV
CCCCEEEEECCCCEEEEECHHHHHHHHHHHHHCHHHHCCCEEEEECHHHHHHHHHHHHHH
RSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYYLK
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLLKSM
HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GCDYVQGFYYAKPLSVAELKEKLIIDF
CCHHHHCCHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]