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The map label for this gene is yijO [H]

Identifier: 22127652

GI number: 22127652

Start: 4201370

End: 4202245

Strand: Reverse

Name: yijO [H]

Synonym: y3781

Alternate gene names: 22127652

Gene position: 4202245-4201370 (Counterclockwise)

Preceding gene: 22127653

Following gene: 22127649

Centisome position: 91.34

GC content: 40.07

Gene sequence:

>876_bases
ATGACGATTAAACTTATCAGTCAACTGACGGCTCTGGTATCAGAGCCGAATAGTATTCACCATGTCTATTTTGCTAAAAG
CCTACGCGCCGCACCATTGCTGGCACAGCAGGTTAATTTTCCTCGTATGGAGTTAATTATCGAGGGTTCACAAGCCATGA
TATGGGATCGGCTTTATGATGATTTTCACCATAAAGATGAATACATCATGCACCGTGGTGATATTTTATTTATTCCCTCT
GGGGGCTGGAATATTCCCCAATGGGAACAACCGGTAATAACGTTAAGTATTTTATTTGGCAAGCAGAGCTTAGGTTTTAG
CCTGCTAAGTTGGGATGGGGAAAGTGTTGTTCACAAAGAAATGGAGAGTGTATTACGGCGAGGGCCACGGGTTGGGGCCT
ATATTTTACAGGCTTTAAACGAAATGTCGTTAATGCAACGAGAGCAAACCACTGTTCAACTTATTGTTAGAAGCCTAATT
AGCCACTGTATCGATTTGCTTAGGAATCAGGTAAAAACGCCATCTCGCAGCCAAACGCTATTTGAATCGATAAGAGAATA
TATTGAGAGAAATTATAGTGAACCATTGACACGGGAATCGGTTGCGCACGTTTTTCATATTTCACCTAACTACCTGTCGC
ATTTATTTCGCAACGCAGGGAATATTGGATTTAATGAGTCGGTCAACAGTGCCCGATTGGAAAATGCTAAAATATTGCTT
AAGTTCTATGAAATGAAAATCAAGGAAGTTGCAAATGTCTGTGGGTTTATTGATAGCAACTATTTTTGTAGGTTATTCCG
TAAAGAGACTGAGTTGACACCATCAGAATATCGCCAACAATATCGCAGTAATATGATGGAAAGAGATGTTATTTAA

Upstream 100 bases:

>100_bases
CTCACTCCAGAAGAAACTGTGGGCTATCTTATGGCTCGCTCAGGGAGAACGTTGCAAGGCGCTCCAGAGATTGAATTAAG
ATACCCCTATTATAACTAAA

Downstream 100 bases:

>100_bases
TGACAATGCTGACGGTTTTGGGGGAAGAAATGACTTTTTTGGTTGCCGCGAGGATTTTCTCAGGATGACATAAAAAAGTT
TGTATATCGGCCTGAACACA

Product: AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MTIKLISQLTALVSEPNSIHHVYFAKSLRAAPLLAQQVNFPRMELIIEGSQAMIWDRLYDDFHHKDEYIMHRGDILFIPS
GGWNIPQWEQPVITLSILFGKQSLGFSLLSWDGESVVHKEMESVLRRGPRVGAYILQALNEMSLMQREQTTVQLIVRSLI
SHCIDLLRNQVKTPSRSQTLFESIREYIERNYSEPLTRESVAHVFHISPNYLSHLFRNAGNIGFNESVNSARLENAKILL
KFYEMKIKEVANVCGFIDSNYFCRLFRKETELTPSEYRQQYRSNMMERDVI

Sequences:

>Translated_291_residues
MTIKLISQLTALVSEPNSIHHVYFAKSLRAAPLLAQQVNFPRMELIIEGSQAMIWDRLYDDFHHKDEYIMHRGDILFIPS
GGWNIPQWEQPVITLSILFGKQSLGFSLLSWDGESVVHKEMESVLRRGPRVGAYILQALNEMSLMQREQTTVQLIVRSLI
SHCIDLLRNQVKTPSRSQTLFESIREYIERNYSEPLTRESVAHVFHISPNYLSHLFRNAGNIGFNESVNSARLENAKILL
KFYEMKIKEVANVCGFIDSNYFCRLFRKETELTPSEYRQQYRSNMMERDVI
>Mature_290_residues
TIKLISQLTALVSEPNSIHHVYFAKSLRAAPLLAQQVNFPRMELIIEGSQAMIWDRLYDDFHHKDEYIMHRGDILFIPSG
GWNIPQWEQPVITLSILFGKQSLGFSLLSWDGESVVHKEMESVLRRGPRVGAYILQALNEMSLMQREQTTVQLIVRSLIS
HCIDLLRNQVKTPSRSQTLFESIREYIERNYSEPLTRESVAHVFHISPNYLSHLFRNAGNIGFNESVNSARLENAKILLK
FYEMKIKEVANVCGFIDSNYFCRLFRKETELTPSEYRQQYRSNMMERDVI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=280, Percent_Identity=53.9285714285714, Blast_Score=314, Evalue=4e-87,
Organism=Escherichia coli, GI1788725, Length=283, Percent_Identity=34.2756183745583, Blast_Score=165, Evalue=3e-42,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33888; Mature: 33757

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKLISQLTALVSEPNSIHHVYFAKSLRAAPLLAQQVNFPRMELIIEGSQAMIWDRLYD
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
DFHHKDEYIMHRGDILFIPSGGWNIPQWEQPVITLSILFGKQSLGFSLLSWDGESVVHKE
HHHCCCHHEEECCCEEEECCCCCCCCCCCCCEEEEEEEECCHHHCCEEECCCCHHHHHHH
MESVLRRGPRVGAYILQALNEMSLMQREQTTVQLIVRSLISHCIDLLRNQVKTPSRSQTL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
FESIREYIERNYSEPLTRESVAHVFHISPNYLSHLFRNAGNIGFNESVNSARLENAKILL
HHHHHHHHHCCCCCCCHHHHHHHHEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
KFYEMKIKEVANVCGFIDSNYFCRLFRKETELTPSEYRQQYRSNMMERDVI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIKLISQLTALVSEPNSIHHVYFAKSLRAAPLLAQQVNFPRMELIIEGSQAMIWDRLYD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
DFHHKDEYIMHRGDILFIPSGGWNIPQWEQPVITLSILFGKQSLGFSLLSWDGESVVHKE
HHHCCCHHEEECCCEEEECCCCCCCCCCCCCEEEEEEEECCHHHCCEEECCCCHHHHHHH
MESVLRRGPRVGAYILQALNEMSLMQREQTTVQLIVRSLISHCIDLLRNQVKTPSRSQTL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
FESIREYIERNYSEPLTRESVAHVFHISPNYLSHLFRNAGNIGFNESVNSARLENAKILL
HHHHHHHHHCCCCCCCHHHHHHHHEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
KFYEMKIKEVANVCGFIDSNYFCRLFRKETELTPSEYRQQYRSNMMERDVI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]