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The map label for this gene is deoB [H]

Identifier: 22127613

GI number: 22127613

Start: 4159692

End: 4160981

Strand: Reverse

Name: deoB [H]

Synonym: y3741

Alternate gene names: 22127613

Gene position: 4160981-4159692 (Counterclockwise)

Preceding gene: 22127614

Following gene: 22127612

Centisome position: 90.44

GC content: 51.63

Gene sequence:

>1290_bases
ATGTGGGGTGGTGGAGCGAATGAATATTCGCCGCCCCCAGAGCGTGAATCCACGCAGGAGAGAGCAATGAAACGTACATT
TATTATGGTATTAGATTCTTTTGGTATTGGTGCTAGTGCAGATGCCAAAAAATTTGGTGACGAAGGCGCAGATACATTAG
GTCATATCGCAGAAGCCTGTGCGCGTGGTGAAGCCAACGTGGGCCGTAGCGGCCCGTTGACACTGCCTAACCTGAGCCGT
TTAGGGCTGGGTAAAGCGGCAGAAGAATCAACCGGTACCTTCCCCGTTGGCTTGGATAAGAACGCGGATATTATTGGTGC
TTATGGCTACGCCAGCGAGCTGTCTTCTGGTAAAGATACGCCGTCAGGTCACTGGGAAATTGCGGGTGTCCCCGTCTTGT
TCGATTGGGGATATTTCAGCGATGTGGAAAACAGCTTTCCACAGGAATTGCTGGATAAACTGGTAAAACGCGCCAATCTG
CCGGGCTATTTGGGTAACTGCCACTCTTCCGGTACGGTGATCCTTGACCAACTGGGTGAGGAGCATATGAAAACCGGGAA
GCCGATTTTCTACACCTCTGCTGACTCCGTATTCCAGATTGCCTGCCACGAAGAGACCTTTGGTCTGGATCGTTTGTATG
AGCTGTGCGAAATTGCCCGTGAAGAGCTGACCGACGGTGGCTATAACATTGGTCGTGTGATTGCACGTCCGTTTATCGGC
GACAAACCGGGTCACTTCCAACGCACGGGTAATCGTCATGATCTGGCGGTTGAACCCCCTGCGCCGACCATGCTGAAAAA
ACTGGTTGATGAGAAGGGCGGTGAAGTGGTGTCTATCGGTAAAATTGCCGATATTTATGCACAGGTTGGTATCACACAGA
AAGTGAAGGCCACGGGGCTGGATGCGTTGTTCGATGCCACGATAGAAGAGATGAAAAAAGCGGGCGATAACACCATCGTT
TTCACTAACTTTGTTGATTTTGACTCGTCTTACGGCCACCGCCGTGATGTTGCTGGTTATGCCGCCGCGTTAGAACTATT
CGACCGCCGCCTACCGGAATTGATGGCACTGATCAAAGAAGATGACATCCTGATCCTGACCGCTGACCACGGTTGTGACC
CAACCTGGCCGGGCACTGACCATACCCGTGAGCACATTCCGGTTTTGGTTTACGGCCCGAAAGTTAAACCGGGTTCATTG
GGGCATCGTGAGACCTTTGCCGATATCGGGCAGACAGTTGCGGCGTATTTTGGGTTGTCGCCAATGGATTACGGCAAGAA
CATGCTTTAG

Upstream 100 bases:

>100_bases
AAACGCCAGTGATTTATCGCCGTATCACTGAATAAACGTCATACTTTTGTTATCGACAGCCCGTGTTACAGCGCCCAAAC
GGATCGGCAATTAATTATGA

Downstream 100 bases:

>100_bases
CGCACAAGGCTGAGCTGAGCGAGTCAGTTCGGCGATTAACATTTCAATTAGGTTAAGGCCTCTATTAGGTTAAAACCGCA
ATTAAGTTAACATATTAATT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MWGGGANEYSPPPERESTQERAMKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEACARGEANVGRSGPLTLPNLSR
LGLGKAAEESTGTFPVGLDKNADIIGAYGYASELSSGKDTPSGHWEIAGVPVLFDWGYFSDVENSFPQELLDKLVKRANL
PGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIG
DKPGHFQRTGNRHDLAVEPPAPTMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGLDALFDATIEEMKKAGDNTIV
FTNFVDFDSSYGHRRDVAGYAAALELFDRRLPELMALIKEDDILILTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSL
GHRETFADIGQTVAAYFGLSPMDYGKNML

Sequences:

>Translated_429_residues
MWGGGANEYSPPPERESTQERAMKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEACARGEANVGRSGPLTLPNLSR
LGLGKAAEESTGTFPVGLDKNADIIGAYGYASELSSGKDTPSGHWEIAGVPVLFDWGYFSDVENSFPQELLDKLVKRANL
PGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIG
DKPGHFQRTGNRHDLAVEPPAPTMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGLDALFDATIEEMKKAGDNTIV
FTNFVDFDSSYGHRRDVAGYAAALELFDRRLPELMALIKEDDILILTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSL
GHRETFADIGQTVAAYFGLSPMDYGKNML
>Mature_429_residues
MWGGGANEYSPPPERESTQERAMKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEACARGEANVGRSGPLTLPNLSR
LGLGKAAEESTGTFPVGLDKNADIIGAYGYASELSSGKDTPSGHWEIAGVPVLFDWGYFSDVENSFPQELLDKLVKRANL
PGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIG
DKPGHFQRTGNRHDLAVEPPAPTMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGLDALFDATIEEMKKAGDNTIV
FTNFVDFDSSYGHRRDVAGYAAALELFDRRLPELMALIKEDDILILTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSL
GHRETFADIGQTVAAYFGLSPMDYGKNML

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=85.995085995086, Blast_Score=733, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=442, Percent_Identity=28.5067873303167, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 46538; Mature: 46538

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWGGGANEYSPPPERESTQERAMKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEAC
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHH
ARGEANVGRSGPLTLPNLSRLGLGKAAEESTGTFPVGLDKNADIIGAYGYASELSSGKDT
HCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCC
PSGHWEIAGVPVLFDWGYFSDVENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGE
CCCCEEEECCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCH
EHMKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIG
HHHHCCCCEEEECCCCEEEEEECCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
DKPGHFQRTGNRHDLAVEPPAPTMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGL
CCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCHHHHHHCH
DALFDATIEEMKKAGDNTIVFTNFVDFDSSYGHRRDVAGYAAALELFDRRLPELMALIKE
HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DDILILTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTVAAYFGLS
CCEEEEEECCCCCCCCCCCCCCHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PMDYGKNML
HHHCCCCCC
>Mature Secondary Structure
MWGGGANEYSPPPERESTQERAMKRTFIMVLDSFGIGASADAKKFGDEGADTLGHIAEAC
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHH
ARGEANVGRSGPLTLPNLSRLGLGKAAEESTGTFPVGLDKNADIIGAYGYASELSSGKDT
HCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCC
PSGHWEIAGVPVLFDWGYFSDVENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGE
CCCCEEEECCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCH
EHMKTGKPIFYTSADSVFQIACHEETFGLDRLYELCEIAREELTDGGYNIGRVIARPFIG
HHHHCCCCEEEECCCCEEEEEECCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
DKPGHFQRTGNRHDLAVEPPAPTMLKKLVDEKGGEVVSIGKIADIYAQVGITQKVKATGL
CCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCHHHHHHCH
DALFDATIEEMKKAGDNTIVFTNFVDFDSSYGHRRDVAGYAAALELFDRRLPELMALIKE
HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DDILILTADHGCDPTWPGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTVAAYFGLS
CCEEEEEECCCCCCCCCCCCCCHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PMDYGKNML
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA