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The map label for this gene is hdeD [H]

Identifier: 22127462

GI number: 22127462

Start: 3980416

End: 3980985

Strand: Direct

Name: hdeD [H]

Synonym: y3588

Alternate gene names: 22127462

Gene position: 3980416-3980985 (Clockwise)

Preceding gene: 22127461

Following gene: 22127463

Centisome position: 86.52

GC content: 46.49

Gene sequence:

>570_bases
ATGCTTAATATCGATCAAAAATACCTAACGAACCTCGATGAAAGCGCGTTAAAAAAACAACGGATCTTTATGCGGATCGT
TGCTGTTTTACTGCTGCTTGGCGGAATTTTCTGTCTTATTAACCCGTTAGCTTCAGGTGCAGCGCTCAGTATGGTCATTG
GGATTCTGCTGCTACTCAGTGGTATTGCGATGATAGTCGGCATGATTGCCAACCGCTCAGATAACTTTTGGCCAATGGTG
GCGGGTATTTTGCTGGGCGTGGCATATATCGTGATGGGTTATGTATTCATTACCAATCCTGCGATAGGCATGATCAGTCT
GGCCGTGGTCCTTGCGGTACTCTTTGCTTTTGGTGGGGTGCTCCGGTTGATCAACGGCTTTAAGGATCTAAAAAGACCGG
GAGCCTGGCTACAAATTTTACTTGGGGTGCTGGATCTGGTGATCACCTATCTTTTGGTCAGCGCCGGGCCATTGATGTCA
ATCACCATGGTTACCACACTCGTGGGGATTGAAATGCTGTTCAGTTCGTTCAGTTGCTTTATGGTTGCTAGTCTATTTAA
ACGCAGCTAA

Upstream 100 bases:

>100_bases
ATCAATCAGATAATATAAATTTAATTTATATATCCAGAAATCGGATTATACTTACTATAGTTATCGGTAACATAGTTCAG
ATAATTCGGGAGTATCAATA

Downstream 100 bases:

>100_bases
TCACTTTCCCGGCGGTATCGTACTCGCGATACCGCCACGCTCAATCAATGTCATATTCATGACGGCTATCACAATCAGCA
CACTGCGATTTCCCAACGGG

Product: acid-resistance membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MLNIDQKYLTNLDESALKKQRIFMRIVAVLLLLGGIFCLINPLASGAALSMVIGILLLLSGIAMIVGMIANRSDNFWPMV
AGILLGVAYIVMGYVFITNPAIGMISLAVVLAVLFAFGGVLRLINGFKDLKRPGAWLQILLGVLDLVITYLLVSAGPLMS
ITMVTTLVGIEMLFSSFSCFMVASLFKRS

Sequences:

>Translated_189_residues
MLNIDQKYLTNLDESALKKQRIFMRIVAVLLLLGGIFCLINPLASGAALSMVIGILLLLSGIAMIVGMIANRSDNFWPMV
AGILLGVAYIVMGYVFITNPAIGMISLAVVLAVLFAFGGVLRLINGFKDLKRPGAWLQILLGVLDLVITYLLVSAGPLMS
ITMVTTLVGIEMLFSSFSCFMVASLFKRS
>Mature_189_residues
MLNIDQKYLTNLDESALKKQRIFMRIVAVLLLLGGIFCLINPLASGAALSMVIGILLLLSGIAMIVGMIANRSDNFWPMV
AGILLGVAYIVMGYVFITNPAIGMISLAVVLAVLFAFGGVLRLINGFKDLKRPGAWLQILLGVLDLVITYLLVSAGPLMS
ITMVTTLVGIEMLFSSFSCFMVASLFKRS

Specific function: Unknown

COG id: COG3247

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789927, Length=189, Percent_Identity=45.5026455026455, Blast_Score=174, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20392; Mature: 20392

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIDQKYLTNLDESALKKQRIFMRIVAVLLLLGGIFCLINPLASGAALSMVIGILLLLS
CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
GIAMIVGMIANRSDNFWPMVAGILLGVAYIVMGYVFITNPAIGMISLAVVLAVLFAFGGV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LRLINGFKDLKRPGAWLQILLGVLDLVITYLLVSAGPLMSITMVTTLVGIEMLFSSFSCF
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
MVASLFKRS
HHHHHHHCC
>Mature Secondary Structure
MLNIDQKYLTNLDESALKKQRIFMRIVAVLLLLGGIFCLINPLASGAALSMVIGILLLLS
CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
GIAMIVGMIANRSDNFWPMVAGILLGVAYIVMGYVFITNPAIGMISLAVVLAVLFAFGGV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LRLINGFKDLKRPGAWLQILLGVLDLVITYLLVSAGPLMSITMVTTLVGIEMLFSSFSCF
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
MVASLFKRS
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]