Click here to switch to the map view.

The map label for this gene is ygiM [H]

Identifier: 22127402

GI number: 22127402

Start: 3913060

End: 3913683

Strand: Direct

Name: ygiM [H]

Synonym: y3528

Alternate gene names: 22127402

Gene position: 3913060-3913683 (Clockwise)

Preceding gene: 22127396

Following gene: 22127403

Centisome position: 85.05

GC content: 45.99

Gene sequence:

>624_bases
ATGCAGAAATTACGCCTAATTTGCCTCACGATACTCAGTGTAAGCCTCTCTTGGGGCGCACAAGCTGAAGAAAAACGCTA
TATATCAGATGAACTGGATACTTACGTTCATAGCGGTCCAGGTAACCAATACCGTATTGTCGGCACACTCAAAGGCGGGG
ATGAGGTCACCCTGATAAGCGTTGATAACGGTACAAATTATGGTCAGATCCGTGACAGTAAAGGAAAAACCACGTGGATC
CCATTGAATCAGTTGAGTGAAACGCCAAGCCTGCGCGTTCGTGTACCCGACCTTGAGCAACAGGTTAAAACACTGACCGA
CAAGCTGGCTAATATTGATAATAGCTGGAATCAGCGCACGGCAGAGATGCAACAGAAAGTGGCGGCCAGCGATAGTGTTA
TCTCTGAATTGCAAAAAGAGAATGAATCGCTGAAAAACCAACTCATTGTTGCTCAGAAAAAAGTTAATGCCGTCAATCTA
CAATTGGATGACAAGCAACGCACTATTATTCTTCAATGGTTTATGTACGGCGGTGGTGTTGCGGGGATTGGCCTGCTCCT
TGGTTTAGTGTTGCCACATTTGATCCCAAGCCGTAAGAAGAACAACCGCTGGATGAACTGCTGA

Upstream 100 bases:

>100_bases
GCTGTGAGACTAAGACAGTTCTCATTCCGGTTTATGCGTTGCGTCGGCAAACTGAACGCACTACTATCGTTCCATAAATT
CACTCATAAATGACTCTCTA

Downstream 100 bases:

>100_bases
TCGTCGGCGTTATTCGAGCGAGTAAATCCCGATGAACTTATTGATCAGTAAAATTAACGACAAGTCAGTGACTCGGGTTA
TTGAGTGTAGTCAACGCACA

Product: putative signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MQKLRLICLTILSVSLSWGAQAEEKRYISDELDTYVHSGPGNQYRIVGTLKGGDEVTLISVDNGTNYGQIRDSKGKTTWI
PLNQLSETPSLRVRVPDLEQQVKTLTDKLANIDNSWNQRTAEMQQKVAASDSVISELQKENESLKNQLIVAQKKVNAVNL
QLDDKQRTIILQWFMYGGGVAGIGLLLGLVLPHLIPSRKKNNRWMNC

Sequences:

>Translated_207_residues
MQKLRLICLTILSVSLSWGAQAEEKRYISDELDTYVHSGPGNQYRIVGTLKGGDEVTLISVDNGTNYGQIRDSKGKTTWI
PLNQLSETPSLRVRVPDLEQQVKTLTDKLANIDNSWNQRTAEMQQKVAASDSVISELQKENESLKNQLIVAQKKVNAVNL
QLDDKQRTIILQWFMYGGGVAGIGLLLGLVLPHLIPSRKKNNRWMNC
>Mature_207_residues
MQKLRLICLTILSVSLSWGAQAEEKRYISDELDTYVHSGPGNQYRIVGTLKGGDEVTLISVDNGTNYGQIRDSKGKTTWI
PLNQLSETPSLRVRVPDLEQQVKTLTDKLANIDNSWNQRTAEMQQKVAASDSVISELQKENESLKNQLIVAQKKVNAVNL
QLDDKQRTIILQWFMYGGGVAGIGLLLGLVLPHLIPSRKKNNRWMNC

Specific function: Unknown

COG id: COG3103

COG function: function code T; SH3 domain protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1605 [H]

Homologues:

Organism=Escherichia coli, GI1789435, Length=206, Percent_Identity=71.3592233009709, Blast_Score=280, Evalue=5e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003646
- InterPro:   IPR013247
- InterPro:   IPR016476 [H]

Pfam domain/function: PF08239 SH3_3 [H]

EC number: NA

Molecular weight: Translated: 23218; Mature: 23218

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLRLICLTILSVSLSWGAQAEEKRYISDELDTYVHSGPGNQYRIVGTLKGGDEVTLIS
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCEEEEEEEECCCCEEEEEE
VDNGTNYGQIRDSKGKTTWIPLNQLSETPSLRVRVPDLEQQVKTLTDKLANIDNSWNQRT
ECCCCCCCEEECCCCCEEEEEHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHH
AEMQQKVAASDSVISELQKENESLKNQLIVAQKKVNAVNLQLDDKQRTIILQWFMYGGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHCCCH
AGIGLLLGLVLPHLIPSRKKNNRWMNC
HHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQKLRLICLTILSVSLSWGAQAEEKRYISDELDTYVHSGPGNQYRIVGTLKGGDEVTLIS
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCEEEEEEEECCCCEEEEEE
VDNGTNYGQIRDSKGKTTWIPLNQLSETPSLRVRVPDLEQQVKTLTDKLANIDNSWNQRT
ECCCCCCCEEECCCCCEEEEEHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHH
AEMQQKVAASDSVISELQKENESLKNQLIVAQKKVNAVNLQLDDKQRTIILQWFMYGGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHCCCH
AGIGLLLGLVLPHLIPSRKKNNRWMNC
HHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]