Click here to switch to the map view.

The map label for this gene is cbpD

Identifier: 221232902

GI number: 221232902

Start: 2181850

End: 2183196

Strand: Reverse

Name: cbpD

Synonym: SPN23F_22340

Alternate gene names: NA

Gene position: 2183196-2181850 (Counterclockwise)

Preceding gene: 221232903

Following gene: 221232901

Centisome position: 98.28

GC content: 39.05

Gene sequence:

>1347_bases
ATGAAAATTTTACCGTTTATAGCAAGAGGAACAAGTTATTACTTGAAGATGTCAGTTAAAAAGCTTGTTCCTTTTTTAGT
AGTAGGATTGATGCTAGCAGCTGGTGATAGTGTCTATGCCTATTCCAGAGGAAATGGATCGATTGCGCGTGGGGATGATT
ATCCTGCTTATTATAAAAATGGGAGCCAGGAGATTGATCAGTGGCGCATGTATTCTCGTCAGTGTACTTCTTTTGTAGCC
TTTCGTTTGAGTAATGTCAATGGTTTTGAAATTCCGGCAGCTTATGGAAATGCGAATGAATGGGGACATCGTGCTCGTCG
GGAAGGTTATCGTGTAGATAATACACCGACGATTGGTTCCATTACTTGGTCTACTGCAGGAACTTATGGTCATGTTGCCT
GGGTGTCAAATGTAATGGGAGATCAGATTGAGATTGAGGAATATAACTATGGTTATACAGAATCCTATAATAAACGAATT
ATAAAAGCAAACACGATGACAGGATTTATTCATTTTAAAGATTTGGATGGTGGCAGTGTTGGGAATAGTCAATCCTCAAC
TTCAACAGGCGGAACTCATTATTTTAAGACCAAGTCTGCTATTAAAACTGAACCCCTAGTTAGTGCAACTGTGATTGATT
ACTATTATCCTGGAGAGAAGGTTCATTATGATCAAATTCTCGAAAAAGACGGCTACAAGTGGTTGAGTTATACTGCCTAT
AATGGAAGCTATCGTTATGTTCAATTGGAGGCTGTGAATAAAAATCCTCTAGGTAATTCTGTTCTTTCTTCAACAGGTGG
AACTCATTATTTTAAGACCAAGTCTGCTATCAAAACTGAACCCCTAGTTAGTGCAACTGTGATTGATTACTATTATCCTG
GGGAGAAGGTTCATTATGATCAGATACTTGAAAAAGACGGCTACAAGTGGTTGAGTTATACGGCTTATAACGGAAGTCGT
CGCTATATACAGCTAGAGGGAGTGACTTCTTCACAAAATTATCAGAATCAATCAGGAAATATCTCTAGCTATGGATCCAA
TAATAGTTCAACTGTCGGTTGGAAGAAAATAAATGGTAGTTGGTATCATTTCAAATCAAATGGTTCTAAATCAACAGGAT
GGCTGAAAGATGGTTCTAGCTGGTATTATTTGAAATTATCTGGTGAAATGCAGACAGGATGGTTAAAGGAGAATGGCTCG
TGGTATTATCTGGGTAGTTCAGGGGCAATGAAAACAGGCTGGTACCAGGTCTCTGGTAAGTGGTATTATTCTTACTCTTC
AGGCGCCTTAGCTGTTAATACGACGGTGGATGGCTACAGAGTAAACAGTGATGGAGAACGAGTATAG

Upstream 100 bases:

>100_bases
TATCTTGACTAAAGTGAGAAATTTTCTCACTTTTTCTTTTTTCTCCGAATAATTTAGGTGAAGGCAATCATCGCTTTATA
TTATTTTTCAAGGAGGAAGA

Downstream 100 bases:

>100_bases
AAAATTGGAGTAGGAGAAATTTCCTGCTCTTTTCTGTAAGCAGTTTCCTTGACATTTTTCTTATTTTGCGCTATCATATA
TACATATAATATATGGGAGT

Product: choline binding protein D

Products: NA

Alternate protein names: Surface Protein PspA; Collagenolytic Protease; Pneumococcal Surface Protein A; Cell Wall Hydrolase/Autolysin; Glycoside Hydrolase Family Protein; Muramidase; Amidase; Glycoside Hydrolase Family; Surface Protein A; Glycosyl Hydrolase Family; Cell Wall/Surface Repeat-Containing Protein; CHAP Domain Containing Protein; Lytic Transglycosylase Catalytic; M6 Family Metalloprotease Domain-Containing Protein; SCP-Like Extracellular; Endo-Beta-N-Acetylglucosaminidase; Conserved Repeat Protein; Surface Protective Antigen SpaB; Calcineurin-Like Phosphoesterase; Surface Antigen; Protective Antigen SpaA-Like Protein; Glycoside Hydrolase Family 3 Protein; Surface Antigen-Related Protein; Dipeptidase; Dipeptidase B; ErfK/YbiS/YcfS/YnhG Family Protein; Subtilase Family Protease; Autolysin; N-Acetylmuramoyl-L-Alanine Amidase; CHAP Domain-Containing Protein; Cell Wall Surface Anchor Protein; SH3 Type 3 Domain-Containing Protein; Cna B Domain Protein

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVYAYSRGNGSIARGDDYPAYYKNGSQEIDQWRMYSRQCTSFVA
FRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGSITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRI
IKANTMTGFIHFKDLDGGSVGNSQSSTSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAYNGSR
RYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGSWYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGS
WYYLGSSGAMKTGWYQVSGKWYYSYSSGALAVNTTVDGYRVNSDGERV

Sequences:

>Translated_448_residues
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVYAYSRGNGSIARGDDYPAYYKNGSQEIDQWRMYSRQCTSFVA
FRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGSITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRI
IKANTMTGFIHFKDLDGGSVGNSQSSTSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAYNGSR
RYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGSWYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGS
WYYLGSSGAMKTGWYQVSGKWYYSYSSGALAVNTTVDGYRVNSDGERV
>Mature_448_residues
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVYAYSRGNGSIARGDDYPAYYKNGSQEIDQWRMYSRQCTSFVA
FRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGSITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRI
IKANTMTGFIHFKDLDGGSVGNSQSSTSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAYNGSR
RYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGSWYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGS
WYYLGSSGAMKTGWYQVSGKWYYSYSSGALAVNTTVDGYRVNSDGERV

Specific function: Unknown

COG id: COG3942

COG function: function code R; Surface antigen

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50383; Mature: 50383

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50911 CHAP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVYAYSRGNGSIARGDDYPAYYKN
CCCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCCHHHCC
GSQEIDQWRMYSRQCTSFVAFRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGS
CCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCE
ITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRIIKANTMTGFIHFKDLDGGSV
EEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECEEEEEEEEECCCCCC
GNSQSSTSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEHHHHHHCCCCEEEEEEEE
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYD
CCCEEEEEEEEECCCCCCCHHHHCCCCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEHH
QILEKDGYKWLSYTAYNGSRRYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGS
HHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCC
WYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGSWYYLGSSGAMKTGWYQVSGK
EEEEECCCCCCCCEEECCCCEEEEEECCCCEECEEEECCCEEEEECCCCCCCCEEEECCE
WYYSYSSGALAVNTTVDGYRVNSDGERV
EEEEECCCEEEEEEEECCEEECCCCCCC
>Mature Secondary Structure
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVYAYSRGNGSIARGDDYPAYYKN
CCCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCCHHHCC
GSQEIDQWRMYSRQCTSFVAFRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGS
CCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCE
ITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRIIKANTMTGFIHFKDLDGGSV
EEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECEEEEEEEEECCCCCC
GNSQSSTSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEHHHHHHCCCCEEEEEEEE
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYD
CCCEEEEEEEEECCCCCCCHHHHCCCCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEHH
QILEKDGYKWLSYTAYNGSRRYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGS
HHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCC
WYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGSWYYLGSSGAMKTGWYQVSGK
EEEEECCCCCCCCEEECCCCEEEEEECCCCEECEEEECCCEEEEECCCCCCCCEEEECCE
WYYSYSSGALAVNTTVDGYRVNSDGERV
EEEEECCCEEEEEEEECCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA