| Definition | Streptococcus pneumoniae ATCC 700669, complete genome. |
|---|---|
| Accession | NC_011900 |
| Length | 2,221,315 |
Click here to switch to the map view.
The map label for this gene is cbpA [H]
Identifier: 221232892
GI number: 221232892
Start: 2170171
End: 2172795
Strand: Reverse
Name: cbpA [H]
Synonym: SPN23F_22240
Alternate gene names: 221232892
Gene position: 2172795-2170171 (Counterclockwise)
Preceding gene: 221232893
Following gene: 221232889
Centisome position: 97.82
GC content: 40.91
Gene sequence:
>2625_bases ATGTTTGCATCAAAAAACGAAAGAAAAGTACATTATTCAATTCGTAAATTTAGTATTGGAGTAGCTAGTGTAGCTGTTGC CAGTCTTTTTATGGGAAGTGTGGTTCATGCGACAGAGAAGGAGGTAACTACCCAAGTAGCCACTTCTTCTAATAAGGCAA ATAAAAGTCAGACAGAACATATGAAAGCTGCTAAACAAGTCGATGAATATATAAAAAAAAAGCTCCAATTAGATAGAAGA AAACATACCCAAAATGTCGGCTTACTCACAAAGTTGGGCGTAATTAAAACGGAGTATTTGCATGGATTAAGTGTTTCAAA AAAGAAGTCGGAAGCTGAGTTGCCGTCAGAAATAAAAGCAAAGTTAGACGCAGCTTTTGAGCAGTTTAAAAAAGATACAT TACCAACAGAACCAGGAAAAAAGGTAGCAGAAGCTGAGAAGAAGGTTGAAGAAGCTAAGAAAAAAGCCGAGGATCAAAAA GAAAAAGATCTCCGTAACTACCCAACCAATACTTACAAAACGCTTGAACTTGACATTGCTGAGTCCGATGTGGAAGTTAA AAAAGCGGAGCTTGAACTAGTAAAAGAGGAAGCTAAGGAATCTCGAGACGAGAAAAAAATTAATCAAGCAAAAGCGAAAG TTGAGAATAAAAAAGCTGAGGCTACAAGGTTAAAAAACATCAAGACAGATCGTGAAAAAGCAGAAGAAGCTAAACGAAGA GCAGATGCTAAGTTGCAGGAAGCTAATGTAGCGACTTCAGAGCAAGATAAATCAAAGAGGCGGGCAAAACGAGAAGTTCT TGGAGAGCTAGCAACACCTGATAAAAAAGAAAATGATGCGAAGTCTTCAGATTCTAGCGTAGGTGAAGAAACTCTTACAA GCCCATCCCTGAAACCAGAAAAAAAGGTAGCAGAAGCTGAGAAGAAGGTTGAAGAAGCTAAGAAAAAAGCCGAGGATCAA AAAGAAGAAGATCGTCGTAACTACCCAACCAATACTTACAAAACGCTTGAACTTGAAATTGCTGAGTCCGATGTGGAAGT TAAAAAAGCGGAGCTTGAACTAGTAAAAGAGGAAGCTAAGGAATCTCGAGACGAGAAAAAAATTAATCAAGCAAAAGCGA AAGTTGAGAATAAAAAAGCTGAGGCTACAAGGTTAAAAAACATCAAGACAGATCGTGAAAAAGCAGAAGAAGCTAAACGA AGAGCAGATGCTAAGTTGCAGGAAGCTAATGTAGCGACTTCAGAGCAAGATAAATCAAAGAGGCGGGCAAAACGAGAAGT TCTTGGAGAGCTAGCAACACCTGATAAAAAAGAAAATGATGCGAAGTCTTCAGATTCTAGCGTAGGTGAAGAAACTCTTA CAAGCCCATCCCTGAAACCAGAAAAAAAGGTAGCAGAAGCTGAGAAGAAGGTTGAAGAAGCTAAGAAAAAAGCCGAGGAT CAAAAAGAAGAAGATCGTCGTAACTACCCAACCAATACTTACAAAACGCTTGAACTTGAAATTGCTGAGTCCGATGTGGA AGTTAAAAAAGCGGAGCTTGAACTAGTAAAAGAGGAAGCTAAGGAATCTCGAAACGAGGAAAAAATTAAGCAAGTAAAAG CGAAAGTTGAGAGTAAAAAAGCTGAGGCTACAAGGCTAGAAAACATCAAGACAGATCGTAAAAAAGCAGAAGAAGAAGAA GCTAAACGAAGAGCAGCAGAAGAAGATAAAGTTAAAGAAAAACCAGCTGAACAACCACAACCAGCGCCGGCTCCTCAACC AGAAAAACCAACTGAAGAGCCTGAGAATCCAGCTCCAGCTCCAGCTCCAAAACCAGAGAATCCAGCTGAAAAACCAAAAG CAGAAAAGCCAGCTGATCAACAAGCTGAAGAAGACTATGCTCGTAGATCAGAAGAAGAATATAACCGCTTGACTCAACAG CAACCGCCAAAAGCAGAAAAACCAGCACAACCATCTACTCCAAAAACAGGCTGGAAACAAGAAAATGGTATGTGGTACTT CTACAATACTGATGGTTCAATGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTACCTCAACAGCAATGGCGCTA TGGCGACAGGATGGCTCCAAAACAATGGTTCATGGTACTATCTAAACGCTAATGGTTCAATGGCAACAGGATGGCTCCAA AACAATGGTTCATGGTACTACCTCAACGCTAATGGTTCAATGGCGACAGGATGGCTCCAATACAATGGTTCATGGTACTA CCTCAACGCTAATGGTGATATGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTACCTAAACGCTAATGGTGATA TGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTACCTAAACGCTAATGGTGATATGGCGACAGGATGGCTCCAA TACAATGGCTCATGGTACTACCTAAACGCTAATGGTGATATGGAGACAGGTTGGGTGAAAGATGGAGATACCTGGTACTA TCTTGAAGCATCAGGTGCTATGAAAGCAAGCCAATGGTTCAAAGTATCAGATAAATGGTACTATGTCAATGGCTCAGGTG CCCTTGCAGTCAACACAACTGTAGATGGCTATGGAGTCAATGCCAATGGTGAATGGGTAAACTAA
Upstream 100 bases:
>100_bases AAATGGAAGCATAAAGAGATAAATACAAAATTCGATTTATATACAGTTCATATTGAAGTGATATAGTAAGGTTAAAGAAA AAATATAGAAGGAAATAAAC
Downstream 100 bases:
>100_bases ACCTAATATAACTAGTTAATACTGACTTCCTGTAAGAACTCTTTAAAGTATTCCCTACAAATACCATATCCTTTCAGTAG ATAATATACCCTTGTAGGAA
Product: choline-binding surface protein A
Products: NA
Alternate protein names: Murein hydrolase [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MFASKNERKVHYSIRKFSIGVASVAVASLFMGSVVHATEKEVTTQVATSSNKANKSQTEHMKAAKQVDEYIKKKLQLDRR KHTQNVGLLTKLGVIKTEYLHGLSVSKKKSEAELPSEIKAKLDAAFEQFKKDTLPTEPGKKVAEAEKKVEEAKKKAEDQK EKDLRNYPTNTYKTLELDIAESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRR ADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAEDQ KEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKR RADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAED QKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRNEEKIKQVKAKVESKKAEATRLENIKTDRKKAEEEE AKRRAAEEDKVKEKPAEQPQPAPAPQPEKPTEEPENPAPAPAPKPENPAEKPKAEKPADQQAEEDYARRSEEEYNRLTQQ QPPKAEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWYYLNANGSMATGWLQ NNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQ YNGSWYYLNANGDMETGWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
Sequences:
>Translated_874_residues MFASKNERKVHYSIRKFSIGVASVAVASLFMGSVVHATEKEVTTQVATSSNKANKSQTEHMKAAKQVDEYIKKKLQLDRR KHTQNVGLLTKLGVIKTEYLHGLSVSKKKSEAELPSEIKAKLDAAFEQFKKDTLPTEPGKKVAEAEKKVEEAKKKAEDQK EKDLRNYPTNTYKTLELDIAESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRR ADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAEDQ KEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKR RADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAED QKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRNEEKIKQVKAKVESKKAEATRLENIKTDRKKAEEEE AKRRAAEEDKVKEKPAEQPQPAPAPQPEKPTEEPENPAPAPAPKPENPAEKPKAEKPADQQAEEDYARRSEEEYNRLTQQ QPPKAEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWYYLNANGSMATGWLQ NNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQ YNGSWYYLNANGDMETGWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN >Mature_874_residues MFASKNERKVHYSIRKFSIGVASVAVASLFMGSVVHATEKEVTTQVATSSNKANKSQTEHMKAAKQVDEYIKKKLQLDRR KHTQNVGLLTKLGVIKTEYLHGLSVSKKKSEAELPSEIKAKLDAAFEQFKKDTLPTEPGKKVAEAEKKVEEAKKKAEDQK EKDLRNYPTNTYKTLELDIAESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRR ADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAEDQ KEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKR RADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAED QKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRNEEKIKQVKAKVESKKAEATRLENIKTDRKKAEEEE AKRRAAEEDKVKEKPAEQPQPAPAPQPEKPTEEPENPAPAPAPKPENPAEKPKAEKPADQQAEEDYARRSEEEYNRLTQQ QPPKAEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWYYLNANGSMATGWLQ NNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQ YNGSWYYLNANGDMETGWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
Specific function: Plays an important role in cell wall degradation and cell separation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 15 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR013338 - InterPro: IPR002901 [H]
Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]
EC number: =3.2.1.96 [H]
Molecular weight: Translated: 98793; Mature: 98793
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFASKNERKVHYSIRKFSIGVASVAVASLFMGSVVHATEKEVTTQVATSSNKANKSQTEH CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH MKAAKQVDEYIKKKLQLDRRKHTQNVGLLTKLGVIKTEYLHGLSVSKKKSEAELPSEIKA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHH KLDAAFEQFKKDTLPTEPGKKVAEAEKKVEEAKKKAEDQKEKDLRNYPTNTYKTLELDIA HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC ESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH ADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPE HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCHH KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHH ESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRRADAKLQEANVATSEQDKSK HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAED HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH QKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRNEEKIKQVKAKVESKK HHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AEATRLENIKTDRKKAEEEEAKRRAAEEDKVKEKPAEQPQPAPAPQPEKPTEEPENPAPA HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PAPKPENPAEKPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKAEKPAQPSTPKTGWKQ CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC ENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWYYLNANGSMATGWLQ CCCEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE NNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQ CCCCEEEEECCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEE NNGSWYYLNANGDMATGWLQYNGSWYYLNANGDMETGWVKDGDTWYYLEASGAMKASQWF CCCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCEECCCCEEEEEECCCCCCCCCCE KVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN EECCEEEEECCCCEEEEEEEECCEEECCCCCCCC >Mature Secondary Structure MFASKNERKVHYSIRKFSIGVASVAVASLFMGSVVHATEKEVTTQVATSSNKANKSQTEH CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH MKAAKQVDEYIKKKLQLDRRKHTQNVGLLTKLGVIKTEYLHGLSVSKKKSEAELPSEIKA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHH KLDAAFEQFKKDTLPTEPGKKVAEAEKKVEEAKKKAEDQKEKDLRNYPTNTYKTLELDIA HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC ESDVEVKKAELELVKEEAKESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH ADAKLQEANVATSEQDKSKRRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPE HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCHH KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHH ESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRRADAKLQEANVATSEQDKSK HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RRAKREVLGELATPDKKENDAKSSDSSVGEETLTSPSLKPEKKVAEAEKKVEEAKKKAED HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH QKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKESRNEEKIKQVKAKVESKK HHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AEATRLENIKTDRKKAEEEEAKRRAAEEDKVKEKPAEQPQPAPAPQPEKPTEEPENPAPA HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PAPKPENPAEKPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKAEKPAQPSTPKTGWKQ CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC ENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWYYLNANGSMATGWLQ CCCEEEEEECCCCEEEEEEECCCCEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE NNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQ CCCCEEEEECCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEE NNGSWYYLNANGDMATGWLQYNGSWYYLNANGDMETGWVKDGDTWYYLEASGAMKASQWF CCCCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCEECCCCEEEEEECCCCCCCCCCE KVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN EECCEEEEECCCCEEEEEEEECCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10096093; 11544234 [H]