BacMap

Definition	Streptococcus pneumoniae ATCC 700669, complete genome.
Accession	NC_011900
Length	2,221,315

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The map label for this gene is yybJ [H]

Identifier: 221232438

GI number: 221232438

Start: 1647702

End: 1648334

Strand: Reverse

Name: yybJ [H]

Synonym: SPN23F_17030

Alternate gene names: 221232438

Gene position: 1648334-1647702 (Counterclockwise)

Preceding gene: 221232439

Following gene: 221232437

Centisome position: 74.21

GC content: 33.65

Gene sequence:

>633_bases
ATGAGACTTGAAATTATAAATGGACAGAAAATTTATGGGAAAAGACCTATTTTAAATCAGTTGAATTTGGTGTTTCAATC
AGGAAAAATTTATGGACTTAAAGGTGATAATGGATCTGGCAAGACGGTTCTTTTAAAGGTACTTGCTGGCTATATTAAGC
TTGACAAAGGAAAAGTTCTTCAAGACGGGAAAGTCTACGGGATAAAAAATCATTATATTCAGGATGCAGGAATTTTAATT
GAAAAAGTCGAGTTTTTATCTCATTTATCCCTGAGAGAAAATTTGGAACTGTTAAGGTATTTTTCATCTAAAGTTACGGA
AAAAAGAATTGCCTATTGGATTCAATACTATGATTTACAGGAATTTGAAGACGTTGAATACCGTCATTTATCCTTGGGAA
CAAAGCAAAAAATGGCCTTGATTCAAGCCTTTATTTCCTCTCCTTCTATACTCTTTCTCGATGAACCTATGAATGCTTTG
GATGAGAAGAGTGTGAGGTTAACCAAACAGGTCATTTTATCTTACCTGAAAAAAGAAAATGGTCTGGTTATCCTGACGTC
GCACATATCGGAAGATATTTCAGACCTTTGTACAGATGTATTAGTTGTCGAAAATGGACATATACAAATGTAA

Upstream 100 bases:

>100_bases
GATGATGGATCATATTGTAACAGTGTATTTACTACTCTTAAGTTTATTAGTTATGTTGATTGTTAGTCGCTTGGAAGAGA
AATTTAAGAAAGGATAAACG

Downstream 100 bases:

>100_bases
AGGATATACAATCCTAGGAGATGGCTTATGGCACATCTAAAATCATTTATTACACGCTATTCCAAGGTTTATATTGGTTT
AGTTCTGCTGATCTGGCTGT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MRLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQM

Sequences:

>Translated_210_residues
MRLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQM
>Mature_210_residues
MRLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQM

Specific function: Part Of The Abc Transporter Complex Fbpabc Involved In Ferric Cations Import. Responsible For Energy Coupling To The Transport System (By Similarity). [C]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=31.3364055299539, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=31.3364055299539, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI30795238, Length=216, Percent_Identity=31.4814814814815, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI27881501, Length=216, Percent_Identity=31.4814814814815, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI21536376, Length=213, Percent_Identity=29.5774647887324, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI105990541, Length=203, Percent_Identity=30.0492610837438, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=27.906976744186, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI150417984, Length=210, Percent_Identity=28.0952380952381, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI31657092, Length=203, Percent_Identity=26.1083743842365, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI153792144, Length=202, Percent_Identity=21.7821782178218, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI6005701, Length=195, Percent_Identity=24.6153846153846, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI27477115, Length=202, Percent_Identity=23.2673267326733, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27436953, Length=191, Percent_Identity=24.6073298429319, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI89111135, Length=207, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27262624, Length=196, Percent_Identity=23.9795918367347, Blast_Score=64, Evalue=7e-11,
Organism=Homo sapiens, GI27262626, Length=196, Percent_Identity=23.9795918367347, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI87081709, Length=210, Percent_Identity=27.6190476190476, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=25.1207729468599, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI87081782, Length=199, Percent_Identity=30.6532663316583, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=27.1889400921659, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787370, Length=208, Percent_Identity=25.4807692307692, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48994943, Length=201, Percent_Identity=24.3781094527363, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787712, Length=211, Percent_Identity=24.6445497630332, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=27.5, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1790525, Length=210, Percent_Identity=25.7142857142857, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789593, Length=209, Percent_Identity=24.8803827751196, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=29.0476190476191, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=24.2857142857143, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789864, Length=210, Percent_Identity=23.3333333333333, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=198, Percent_Identity=26.7676767676768, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=24.2990654205607, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789672, Length=169, Percent_Identity=26.6272189349112, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=27.4418604651163, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082064, Length=184, Percent_Identity=28.2608695652174, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI87082268, Length=204, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786253, Length=192, Percent_Identity=23.4375, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788472, Length=201, Percent_Identity=29.3532338308458, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=26.046511627907, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082267, Length=203, Percent_Identity=24.6305418719212, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787182, Length=228, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788210, Length=189, Percent_Identity=24.8677248677249, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787041, Length=205, Percent_Identity=27.3170731707317, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790544, Length=221, Percent_Identity=23.0769230769231, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=198, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=206, Percent_Identity=25.2427184466019, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=207, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=200, Percent_Identity=25.5, Blast_Score=63, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71983510, Length=200, Percent_Identity=25.5, Blast_Score=63, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71983523, Length=200, Percent_Identity=25.5, Blast_Score=63, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6324498, Length=225, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6325030, Length=207, Percent_Identity=29.951690821256, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574150, Length=212, Percent_Identity=27.3584905660377, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI116007328, Length=212, Percent_Identity=27.3584905660377, Blast_Score=91, Evalue=4e-19,
Organism=Drosophila melanogaster, GI116007184, Length=210, Percent_Identity=30.4761904761905, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI221500365, Length=210, Percent_Identity=30.4761904761905, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24666092, Length=207, Percent_Identity=26.5700483091787, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643674, Length=207, Percent_Identity=28.0193236714976, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650853, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24650855, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI281362751, Length=212, Percent_Identity=26.8867924528302, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221512771, Length=188, Percent_Identity=26.063829787234, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24582014, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582012, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581191, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581189, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581193, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581195, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581387, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581383, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581385, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 24008; Mature: 24008

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVL
CEEEEECCCEECCCCCHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
QDGKVYGIKNHYIQDAGILIEKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQ
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNALDEKSVRLTKQVILSYLKKEN
HHCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
GLVILTSHISEDISDLCTDVLVVENGHIQM
CEEEEEHHHHHHHHHHHHHEEEEECCCCCC
>Mature Secondary Structure
MRLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVL
CEEEEECCCEECCCCCHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
QDGKVYGIKNHYIQDAGILIEKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQ
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNALDEKSVRLTKQVILSYLKKEN
HHCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
GLVILTSHISEDISDLCTDVLVVENGHIQM
CEEEEEHHHHHHHHHHHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938973; 7584024; 9384377 [H]