Definition | Mycobacterium leprae Br4923 chromosome, complete genome. |
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Accession | NC_011896 |
Length | 3,268,071 |
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The map label for this gene is eccD3 [H]
Identifier: 221230838
GI number: 221230838
Start: 3011577
End: 3013034
Strand: Reverse
Name: eccD3 [H]
Synonym: MLBr_02529
Alternate gene names: 221230838
Gene position: 3013034-3011577 (Counterclockwise)
Preceding gene: 221230839
Following gene: 221230837
Centisome position: 92.2
GC content: 61.73
Gene sequence:
>1458_bases ATGGTGTACGTCTTTGCAGAAGAATTTTGCGAGGGCCCGGTGACGTCCGGTGCCGTCATGCCGATAGTCCGCGTCGCCAT TCTCGCGGACAGCCGGTTGATAGAAATGGCTCTGCCCACCGAATTGCCGTTGCGCGAAATCCTTCCCGCGGTAAAGCGTT TGGTGGTTCCTGCAGCGTCGGATAATGATTCTCCGCTGGCTGCCAACGCGAGTTTGCACCTGAGCCTGGCTCCCATCGGT GGAGCACCATTCAGCCTGGATGCCAGCCTGGACACCGTTGGAGTCGTCGACGGTGATCTGCTCGCATTGCAGCCGGTGCC AGTCGGTCCGGCGGCGCCCGGTATTGTCGAGGATATCGCCGATGCCGCGATGATCTTCTCGACAGCCCGGCTACAGTCGT GGGGCCCGACGCATATTCGACGCGGGGCCCTGGCCGCGACGACCGCTGTGACCTTTGCGGCAACTGGGCTGGGTGTCACC TATCGGGCAGTCACCGGTGCGTTGACCGGATTGCTCGTGGTCATTGTGATCGCGGTGCTCATCGCATTGGGTGGTTTGGT CCTTAGGTCACGTGCGGCGCGCACTGGGTTGGTACTGTCGATCGCAGCGCTGGTACCCATTGGTGCCGTCTTTGCGCTGG CGGTACCCGGCATATTCGGGCCAGCGCAGGTGTTGTTAGCCTCCGCCGGCGTTACCGCGTGGTCGCTAATTGCTCTGATC GTTCCTGGTCCTGAACGCGTGCGGATCGTTGCCTTTTTCACTGCTACTGTGGTGATCGGGGTTGCTGTGATGCTGGAGGC CGGCGCTGCATTGCTCTGGCAGCTAACGCCATTGACCATTGGCTGTGGCTTGATTCTGGCTGCTTTGCTGGTTACTGTCG AGGCGGCTCAGCTCTCCGCATTGTGGGCGCGGTTCCCATTGCCTGTGATCCCGGCACCGGGTGATCCGACCCCGTCGGCG CCGTCGTTTCAGGTGCTTGAGGACTTGCCGCGTCGGGTGCGCATCAGCTCTGCTCATCAGAGCGGTTTTATCGCCGCCGC CACGTTGCTCAGCATGCTAGGCTCGGTGGCGATCGCATTGCGTCCTGAGGCGGTGAGCAGTGTGGGCTGGTACTTGGTAG CCGCAACCGCGGTTGCCGCTACACTGCGTGCCCGGGTGTGGGATTCGGTCGCCTGTAAAGCCTGGTTGCTTGCCCAGCCG TATTTGGTCGCCAGCGTGCTGCTGGGGCTTTACACCGCTACGGGACGTTACGTCGCTGCTTCCGCTGCGCTGCTGGTGCT TGTCGTGGTTGTGTTGGCATGGGCGGTGGTCGCACTCAACCCGCGGATCGCCTCGTCGGATAGCTATTCGCTGCCATTGC GCCGTCTGCTTGGCATGGTCGCCTCCGGTCTTGATGCTTCACTGATCCCCGCCATGGCCTATCTGGTTAGTCTTTTCAGC TGGGTACTCAATCGATGA
Upstream 100 bases:
>100_bases CGATTCAAAACAGTCGGGTGACACAGCGTAGTAGTAGTGAAAACCATGGCCGTGCAGGCGATGCGGTCGTCATAGATAGA GAGAAAACGATGTACCAAGT
Downstream 100 bases:
>100_bases TGCGGTATCGATGATGCGGTCTGAACTTCGAATTGGGCTAGCCGGTATCGCAACGACTCTGGTCGTCTTCCAAGCAACAT TGTTGCGAGGCTGTCCGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: ESX conserved component D3; Type VII secretion system protein eccD3; T7SS protein eccD3 [H]
Number of amino acids: Translated: 485; Mature: 485
Protein sequence:
>485_residues MVYVFAEEFCEGPVTSGAVMPIVRVAILADSRLIEMALPTELPLREILPAVKRLVVPAASDNDSPLAANASLHLSLAPIG GAPFSLDASLDTVGVVDGDLLALQPVPVGPAAPGIVEDIADAAMIFSTARLQSWGPTHIRRGALAATTAVTFAATGLGVT YRAVTGALTGLLVVIVIAVLIALGGLVLRSRAARTGLVLSIAALVPIGAVFALAVPGIFGPAQVLLASAGVTAWSLIALI VPGPERVRIVAFFTATVVIGVAVMLEAGAALLWQLTPLTIGCGLILAALLVTVEAAQLSALWARFPLPVIPAPGDPTPSA PSFQVLEDLPRRVRISSAHQSGFIAAATLLSMLGSVAIALRPEAVSSVGWYLVAATAVAATLRARVWDSVACKAWLLAQP YLVASVLLGLYTATGRYVAASAALLVLVVVVLAWAVVALNPRIASSDSYSLPLRRLLGMVASGLDASLIPAMAYLVSLFS WVLNR
Sequences:
>Translated_485_residues MVYVFAEEFCEGPVTSGAVMPIVRVAILADSRLIEMALPTELPLREILPAVKRLVVPAASDNDSPLAANASLHLSLAPIG GAPFSLDASLDTVGVVDGDLLALQPVPVGPAAPGIVEDIADAAMIFSTARLQSWGPTHIRRGALAATTAVTFAATGLGVT YRAVTGALTGLLVVIVIAVLIALGGLVLRSRAARTGLVLSIAALVPIGAVFALAVPGIFGPAQVLLASAGVTAWSLIALI VPGPERVRIVAFFTATVVIGVAVMLEAGAALLWQLTPLTIGCGLILAALLVTVEAAQLSALWARFPLPVIPAPGDPTPSA PSFQVLEDLPRRVRISSAHQSGFIAAATLLSMLGSVAIALRPEAVSSVGWYLVAATAVAATLRARVWDSVACKAWLLAQP YLVASVLLGLYTATGRYVAASAALLVLVVVVLAWAVVALNPRIASSDSYSLPLRRLLGMVASGLDASLIPAMAYLVSLFS WVLNR >Mature_485_residues MVYVFAEEFCEGPVTSGAVMPIVRVAILADSRLIEMALPTELPLREILPAVKRLVVPAASDNDSPLAANASLHLSLAPIG GAPFSLDASLDTVGVVDGDLLALQPVPVGPAAPGIVEDIADAAMIFSTARLQSWGPTHIRRGALAATTAVTFAATGLGVT YRAVTGALTGLLVVIVIAVLIALGGLVLRSRAARTGLVLSIAALVPIGAVFALAVPGIFGPAQVLLASAGVTAWSLIALI VPGPERVRIVAFFTATVVIGVAVMLEAGAALLWQLTPLTIGCGLILAALLVTVEAAQLSALWARFPLPVIPAPGDPTPSA PSFQVLEDLPRRVRISSAHQSGFIAAATLLSMLGSVAIALRPEAVSSVGWYLVAATAVAATLRARVWDSVACKAWLLAQP YLVASVLLGLYTATGRYVAASAALLVLVVVVLAWAVVALNPRIASSDSYSLPLRRLLGMVASGLDASLIPAMAYLVSLFS WVLNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the eccD/snm4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006707 [H]
Pfam domain/function: PF04600 DUF571 [H]
EC number: NA
Molecular weight: Translated: 49867; Mature: 49867
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVYVFAEEFCEGPVTSGAVMPIVRVAILADSRLIEMALPTELPLREILPAVKRLVVPAAS CEEEEEHHHCCCCCCCCHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHCCCCCC DNDSPLAANASLHLSLAPIGGAPFSLDASLDTVGVVDGDLLALQPVPVGPAAPGIVEDIA CCCCCEEECCEEEEEEEECCCCCEEECCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHH DAAMIFSTARLQSWGPTHIRRGALAATTAVTFAATGLGVTYRAVTGALTGLLVVIVIAVL HHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH IALGGLVLRSRAARTGLVLSIAALVPIGAVFALAVPGIFGPAQVLLASAGVTAWSLIALI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHE VPGPERVRIVAFFTATVVIGVAVMLEAGAALLWQLTPLTIGCGLILAALLVTVEAAQLSA ECCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LWARFPLPVIPAPGDPTPSAPSFQVLEDLPRRVRISSAHQSGFIAAATLLSMLGSVAIAL HHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHEEEE RPEAVSSVGWYLVAATAVAATLRARVWDSVACKAWLLAQPYLVASVLLGLYTATGRYVAA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHH SAALLVLVVVVLAWAVVALNPRIASSDSYSLPLRRLLGMVASGLDASLIPAMAYLVSLFS HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH WVLNR HHHCC >Mature Secondary Structure MVYVFAEEFCEGPVTSGAVMPIVRVAILADSRLIEMALPTELPLREILPAVKRLVVPAAS CEEEEEHHHCCCCCCCCHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHCCCCCC DNDSPLAANASLHLSLAPIGGAPFSLDASLDTVGVVDGDLLALQPVPVGPAAPGIVEDIA CCCCCEEECCEEEEEEEECCCCCEEECCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHH DAAMIFSTARLQSWGPTHIRRGALAATTAVTFAATGLGVTYRAVTGALTGLLVVIVIAVL HHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH IALGGLVLRSRAARTGLVLSIAALVPIGAVFALAVPGIFGPAQVLLASAGVTAWSLIALI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHE VPGPERVRIVAFFTATVVIGVAVMLEAGAALLWQLTPLTIGCGLILAALLVTVEAAQLSA ECCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LWARFPLPVIPAPGDPTPSAPSFQVLEDLPRRVRISSAHQSGFIAAATLLSMLGSVAIAL HHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHEEEE RPEAVSSVGWYLVAATAVAATLRARVWDSVACKAWLLAQPYLVASVLLGLYTATGRYVAA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHH SAALLVLVVVVLAWAVVALNPRIASSDSYSLPLRRLLGMVASGLDASLIPAMAYLVSLFS HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH WVLNR HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]