Click here to switch to the map view.

The map label for this gene is dop [H]

Identifier: 221230162

GI number: 221230162

Start: 1573940

End: 1575484

Strand: Direct

Name: dop [H]

Synonym: MLBr_01320

Alternate gene names: 221230162

Gene position: 1573940-1575484 (Clockwise)

Preceding gene: 221230161

Following gene: 221230163

Centisome position: 48.16

GC content: 61.81

Gene sequence:

>1545_bases
ATGCAGCGGATTATTGGGACGGAGGTAGAGTATGGCATTTCGTCCCCGTCGGACCCGACCGCCAACCCGATCCTCACCTC
GACGCAGGCGGTCTTGGCCTACGCTGCTGCCGCTGGCATTCAGCGTGTTAAACGCACCCGCTGGGACTACGAGGTGGAAT
CGCCGCTGCGGGACGCCCGGGGCTTCGATCTAAGCCGGTCAGCGGGACCGCCGCCGGTGGTGGACGCCGATGAAGTTGGC
GCTGCCAACATGATCTTGACCAACGGGGCGCGGCTGTATGTCGATCATGCGCACCCGGAGTACTCTGCCCCCGAATGCAC
CGACCCGCTGGACGCAGTGATCTGGGACAAGGCTGGGGAGCGTGTGATGGAAGCCGCCGCTCGGCATGTCGCTAGTGTGC
CGGGAGCCGCCAAACTGCAGTTGTACAAGAACAATGTTGACGGCAAGGGTGCCTCCTATGGGGCGCATGAGAACTATCTG
ATGTCGCGGCAGACACCGTTTTCAGCTATCATAGCTGGGTTGACCCCGTTTTTGGTGTCGAGGCAGGTGGTCACCGGCTC
TGGGCGGGTCGGCATCGGGCCCGCGGGTGACGAGCCCGGCTTCCAGCTGTCCCAGCGTTCCGATTACATCGAGGTCGAGG
TCGGGCTCGAGACTACGCTGAAACGCGGCATTATCAACACTCGCGATGAACCGCACGCCGACGCCGACCGGTATCGCCGG
TTGCATGTCATCGTCGGTGATGCCAACCTGGCCGAGACATCGACCTACCTGAAACTGGGCACCACGGCGCTGGTGCTCGA
TTTGATCGAAGAAGGTCCAGTACACGGAATAGACTTGACCGACCTCACGCTGGCCCGGCCGGTGCATGCTGTCCATGCGA
TAAGCCGCGATGCATCGTTGCGGGCCACTGTGACGTTGGTCGACGGCCGTGAATTGACCGGTCTTGCGCTACAACGGATT
TACCTCGACCGAGTGGCAAAGCTGGTCGACAGCCGTGACCCTGACCCCCGCGCAGCCGACGTCGTGAAAACTTGGGTGCA
CGTGCTTGACCAGCTGGAGCGCGACCCGATGGACTGTGCTGAACTGCTGGACTGGCCGGCGAAGCTGCGGCTGCTTGAAG
GTTTTCGGCAGCGGGAGAACTTGAACTGGTCAGCCCCGCGGCTACATCTAGTCGACCTGCAGTATTCTGACGTTCGGTTG
GACAAGGGGCTGTATAATAGGTTGGTCGCCCGCGGCTCGATGAAACGTCTGGTCAACGAACACCAGGTGCTCCGGGCGGT
GAACAACCCGCCGACCGATACTCGCGCGTATTTTCGCGGCGAATGCTTGCGCCGGTTCAGTGCCGACATCGCCGCGGCCA
GTTGGGACTCAGTGATCTTTGACCTAGGCGGTGACTCGCTGGTTCGGATCCCGACCTTGGAGCCACTGCGCGGCAGCAAG
GCCCATGTCGGAGCGCTGTTGGACTCGGTGGACAGCGCTGCGGAATTAGTGGAGCAATTAACTACTAAGCCTGTTGACCC
GGGAAAGGTCGGACTGGACCGGTAG

Upstream 100 bases:

>100_bases
GTTGCGCTTCTCTGGCGTATAGACCGATGGTTATGGAACCGGCGTCGCACCGAGACGCACGCCCGCGTACGCCGTCGACG
CGTCCCCTAGGCTTCAAGTC

Downstream 100 bases:

>100_bases
GGTAGAGAAAGACTAGAAACAGGAGGCGGCGATGGCTCAGGAGCAGACTAGGCGTGGTGGTGGAGGTGATGACGATGAGT
TCACCAGCAGCACGTCTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: Deamidase of protein Pup [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MQRIIGTEVEYGISSPSDPTANPILTSTQAVLAYAAAAGIQRVKRTRWDYEVESPLRDARGFDLSRSAGPPPVVDADEVG
AANMILTNGARLYVDHAHPEYSAPECTDPLDAVIWDKAGERVMEAAARHVASVPGAAKLQLYKNNVDGKGASYGAHENYL
MSRQTPFSAIIAGLTPFLVSRQVVTGSGRVGIGPAGDEPGFQLSQRSDYIEVEVGLETTLKRGIINTRDEPHADADRYRR
LHVIVGDANLAETSTYLKLGTTALVLDLIEEGPVHGIDLTDLTLARPVHAVHAISRDASLRATVTLVDGRELTGLALQRI
YLDRVAKLVDSRDPDPRAADVVKTWVHVLDQLERDPMDCAELLDWPAKLRLLEGFRQRENLNWSAPRLHLVDLQYSDVRL
DKGLYNRLVARGSMKRLVNEHQVLRAVNNPPTDTRAYFRGECLRRFSADIAAASWDSVIFDLGGDSLVRIPTLEPLRGSK
AHVGALLDSVDSAAELVEQLTTKPVDPGKVGLDR

Sequences:

>Translated_514_residues
MQRIIGTEVEYGISSPSDPTANPILTSTQAVLAYAAAAGIQRVKRTRWDYEVESPLRDARGFDLSRSAGPPPVVDADEVG
AANMILTNGARLYVDHAHPEYSAPECTDPLDAVIWDKAGERVMEAAARHVASVPGAAKLQLYKNNVDGKGASYGAHENYL
MSRQTPFSAIIAGLTPFLVSRQVVTGSGRVGIGPAGDEPGFQLSQRSDYIEVEVGLETTLKRGIINTRDEPHADADRYRR
LHVIVGDANLAETSTYLKLGTTALVLDLIEEGPVHGIDLTDLTLARPVHAVHAISRDASLRATVTLVDGRELTGLALQRI
YLDRVAKLVDSRDPDPRAADVVKTWVHVLDQLERDPMDCAELLDWPAKLRLLEGFRQRENLNWSAPRLHLVDLQYSDVRL
DKGLYNRLVARGSMKRLVNEHQVLRAVNNPPTDTRAYFRGECLRRFSADIAAASWDSVIFDLGGDSLVRIPTLEPLRGSK
AHVGALLDSVDSAAELVEQLTTKPVDPGKVGLDR
>Mature_514_residues
MQRIIGTEVEYGISSPSDPTANPILTSTQAVLAYAAAAGIQRVKRTRWDYEVESPLRDARGFDLSRSAGPPPVVDADEVG
AANMILTNGARLYVDHAHPEYSAPECTDPLDAVIWDKAGERVMEAAARHVASVPGAAKLQLYKNNVDGKGASYGAHENYL
MSRQTPFSAIIAGLTPFLVSRQVVTGSGRVGIGPAGDEPGFQLSQRSDYIEVEVGLETTLKRGIINTRDEPHADADRYRR
LHVIVGDANLAETSTYLKLGTTALVLDLIEEGPVHGIDLTDLTLARPVHAVHAISRDASLRATVTLVDGRELTGLALQRI
YLDRVAKLVDSRDPDPRAADVVKTWVHVLDQLERDPMDCAELLDWPAKLRLLEGFRQRENLNWSAPRLHLVDLQYSDVRL
DKGLYNRLVARGSMKRLVNEHQVLRAVNNPPTDTRAYFRGECLRRFSADIAAASWDSVIFDLGGDSLVRIPTLEPLRGSK
AHVGALLDSVDSAAELVEQLTTKPVDPGKVGLDR

Specific function: Specifically catalyzes the deamidation of the C-terminal glutamine of the prokaryotic ubiquitin-like protein Pup to glutamate, thereby rendering Pup competent for conjugation. Also displays depupylase (DPUP) activity, removing conjugated Pup from target p

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Pup ligase/Pup deamidase family. Pup deamidase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022366
- InterPro:   IPR004347 [H]

Pfam domain/function: PF03136 DUF245 [H]

EC number: NA

Molecular weight: Translated: 56241; Mature: 56241

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRIIGTEVEYGISSPSDPTANPILTSTQAVLAYAAAAGIQRVKRTRWDYEVESPLRDAR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHC
GFDLSRSAGPPPVVDADEVGAANMILTNGARLYVDHAHPEYSAPECTDPLDAVIWDKAGE
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
RVMEAAARHVASVPGAAKLQLYKNNVDGKGASYGAHENYLMSRQTPFSAIIAGLTPFLVS
HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
RQVVTGSGRVGIGPAGDEPGFQLSQRSDYIEVEVGLETTLKRGIINTRDEPHADADRYRR
HHEEECCCCCCCCCCCCCCCCEECCCCCEEEEEECHHHHHHHCCCCCCCCCCCCHHHCEE
LHVIVGDANLAETSTYLKLGTTALVLDLIEEGPVHGIDLTDLTLARPVHAVHAISRDASL
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
RATVTLVDGRELTGLALQRIYLDRVAKLVDSRDPDPRAADVVKTWVHVLDQLERDPMDCA
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
ELLDWPAKLRLLEGFRQRENLNWSAPRLHLVDLQYSDVRLDKGLYNRLVARGSMKRLVNE
HHHCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
HQVLRAVNNPPTDTRAYFRGECLRRFSADIAAASWDSVIFDLGGDSLVRIPTLEPLRGSK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCH
AHVGALLDSVDSAAELVEQLTTKPVDPGKVGLDR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQRIIGTEVEYGISSPSDPTANPILTSTQAVLAYAAAAGIQRVKRTRWDYEVESPLRDAR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHC
GFDLSRSAGPPPVVDADEVGAANMILTNGARLYVDHAHPEYSAPECTDPLDAVIWDKAGE
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
RVMEAAARHVASVPGAAKLQLYKNNVDGKGASYGAHENYLMSRQTPFSAIIAGLTPFLVS
HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
RQVVTGSGRVGIGPAGDEPGFQLSQRSDYIEVEVGLETTLKRGIINTRDEPHADADRYRR
HHEEECCCCCCCCCCCCCCCCEECCCCCEEEEEECHHHHHHHCCCCCCCCCCCCHHHCEE
LHVIVGDANLAETSTYLKLGTTALVLDLIEEGPVHGIDLTDLTLARPVHAVHAISRDASL
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
RATVTLVDGRELTGLALQRIYLDRVAKLVDSRDPDPRAADVVKTWVHVLDQLERDPMDCA
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
ELLDWPAKLRLLEGFRQRENLNWSAPRLHLVDLQYSDVRLDKGLYNRLVARGSMKRLVNE
HHHCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
HQVLRAVNNPPTDTRAYFRGECLRRFSADIAAASWDSVIFDLGGDSLVRIPTLEPLRGSK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCH
AHVGALLDSVDSAAELVEQLTTKPVDPGKVGLDR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]